AMCG00021323


Basic Information

Item Value
gene id AMCG00021323
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14532782 ~ 14552790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021323
ATGACCACAGCAGCTTGGTACCACCGTGACATCAGCCGTGTGCAGGCGGAAGACCTGCTGGCTAAGGCCGGGAGAGATGGCAGTTTCCTGGTACGGGACAGTGAGTCAGTGCCCGGAGCCTACGCCCTCTGCCTGCTGTTCCAGCGCCATGTTCACACATATCGAGTGTTGCCGGATGAGGAGGGTCTGCTGGCTGTCCAGACATCACAGGGGGTGCAGGTGAACTGTTTCCGGACCCTGGCAGACCTGGTGTCAGGGTACCAGCAGCCCCACAAAGGCCTGGTGACTCCCCTGCAGTACCCTGTGGGCCGCGAGGCAGAGCCAGGGGACGAGGGCTCAGACGGTGAAGATGAGAAGCCTGGGGTTGCGTGGAGTCAGAGTGGCGTGGTCCAGCCCTCAGCCAGCACCGCGCCCCCTGCTGGCTCCCCCAGCCCCCATCTGCTTTTCCTCCAGAGACTGCAGGAGTCCTCCCCAcccagTATGGCGGGCGATGTGATTGGCCTGCTCAGCGACTACCTGCGGAGTGAACTGCTGCTGGACCTAGAGGGGGTTCGCAAAGGGGGGTCCAGCCTACGCTTCCTCAACAGGACCCTGGGAAGTGCATGCGAGGGTCTGCACAATGAGATTGACCTGACCATGTCCAGTCTGGAGACACTGGCTAAAGTGTTTGACCATCCCAGCTGCCCCCTCAACTGCCCTGGGACACAGGTGCTGAAGGCTTTACAGGAAGCAGTGTCCAATCACAACCTGGCATCACAGCCCACCCCGCCCCCTGAGCCCGCGCCTATGGCACGCCCTGACGTCAGAGCCACACCTGTCCACACCTTCCAGgtgaaGGTGGTGCGCTGTGGCAGGCTGTCTCTGCGTGTGGACGTGGATGGTGGTCTGCTGGTGTTCGACGGGAAGTCAAGGTCCTTCTGTGAGGAAACGGTGTCACATGACAAGATTCTCCAGCTGGTGAAGTTCCAGAGCTCCCCAATCAGGCTTCGTGTAGTCCTGGGTGGCCACAGGACTCCCCCGAGGGAAATAGTCTTCGAGAGTGCCCGGAAACGGGAGGCATTCTGCCAGCTCCTCCAACTGATGAAGATGAGACACTCTGGGCAGAGTGAGCCGGACGTCATCTCTGTGTTTGTCGGCACCTGGAACATGGGCGGCTCCCCCCCACCTCGCTCTCTGCTGACCTGGATGTCGTGCTGTGGTCTGGGCCGAGTCCAGGATGAATCGACTGCAGTGCTGCCTCATGATGTGTACGCCATGGGCACGCAGGAGAACgcgcagggagagagggagtgggctGAGCAGCTGAGAAGCACGCTGAAAACTCTCACCCAGATCGACTTCAAACTGGTGGCGCTGCAGTCCCTGTGGAATATCAGGCTGGCAGTGTTCGTGAAACCTGAACACGAGCACCGCATCAGCCACGTGAACATGGCGAGTGTCAAGACTGGCCTGGGCAACACTCTGGGTAACAAAGGAGCCGTGGgagtttcttttctcttcaatgGCACCTCTTTCGGATTTGTCAACTGCCACCTGACCTCTGGCAGTGAGAAAACGCTGAGGCGGAACCAGAACTTCCAAGACATCCTGCGGTTGCTCTCCCTGGGGGACAGACAGCTGAGCTCCTTTGACATCAGCCTGCGCTTCACTCACCTCTTCTGGTTTGGAGACCTGAACTACCGGCTGGACCTGGATGTACAGGACATTCTGAGGCATGTTGCCAAGCGAGAGTTTGAGGAGCTGATGTGTGCAGACCAGCTGACTCGAGAGCGACATAAGAGGAAGGTCTTTGTGCACTTCAGTGAGTTCGGATCAACGTACCCTCATGGTGTGACCGCATCCTCTGGAAATCTTACCCAGAAACCCACCTATGCTGCACTTCCTATGGCTGTACTGATGACATCATCACCAGTGACCACTCCCCTGTCTTTGCCACATTCCAGTGATGAGCAAGCCTGTATTGAGCTGGAGGGTGTGGAGGCTATTGTGAAGACTGCAAGCAAGGCCAAGTTCTTCATTGAGTTTCACTCTTACTGCCTGGAGGATTTCCGTCGCTCTAGTGAGAACGATGTTCAGAACTGTGAGGTGCCTGGATTCCTGAAACTGGGCTGGACAGCAAAACAGCTGCCCAAGCTTGTCCCCCTGCTCTCAGACATGGAATACCTCCAGGACCAACACCTCCTTCTCTCCATAAAGTCCTGCGATGGGTTTGAGTCCTATGGCGAGTGCTGCATTGCTCTGCGGTCACTCATCGGAAGCACGGCTGAGCAGTTCGAGACGTTCCTCACTCACCGGGGGGAGGAGATGGGTTCTATACGGGGGAAAGTCAGGGTTCACGTGCCCAAGGACCGCCGCAACACCAGAGAGAGGATCTACGAGTGGTTTTGCTTTGAGAAGGATGAAAAGGGTGAGGTCAGAGGTCGACTGTCGCCCCCAACAACGAGCGGAGCCAGTACACGAACCGGACCTGCCCCTTCCAGTAGGGCTCCCAGCAGCTACACCAACCCTGCCTACTTCATTTTCGAGGGGGTCCCAACCCTGCGGAAGGTGAATGAAGACCAGATCCTGTCTGGCAGAGAGCCACTGGAAGTGTGGTCCAAAGACTGTGTCCTGCAGCTTCCCAGAGTATCAGTAGGGGCGAGCCACGACAGCAGAACCCCTAGGAGATCCAACTTCACCGAGATCGAAATCCCTGGGTGCCTCCCGGATTACAGGTCCCCCCGTGATTGCCAGCCCCAAACTGGCTCCTCCTACCAGCTCTTCCCTGCCAAGGACAGGTCCACGGGAACAGGTCCTCCCAGGGATATGCCACACACCTCTCTCTATAAAGATCAGCCACTTTATAAAGATTGCATGGGGAAGGATTTAGCGTCTCTGTATCAGGACCACAAGAGTTTGTACATGGATCAGAGGGGATGGGTGAAAGAGAAGCCTTTATCATACCACGATCAGTCAAAGCTCTATAAGGACCAGTTCAGTAGCAAGCGGTGCAGGCTGTATAAGGAGCGATCCCCTTCAGTGCACAAGTCTGCCTTGTTCTATCCCTCTGCACACACACCCCAGTCTGAAGCTATGGCCTCTTGGGTTGTGGAACCCCCGGCGGGCACATCCGGAGACCACTCCCTCACTGCTCTACAGATTGCCAAGTCACTTAGCGAAGTGGACTTTCAGCCAGTGGACACTGAATACTCTGTCCCACGGAGGCAGGGTCAAGGAAGGGATCCTGGCTATGAAAGAACCTGCCGGACTCAAAGTGGCATCAGAGGCTGCatctgggagagagagGTGATGTCAGCTCACGGGGGCCCAGAAAATCTGCGGGAGATGCTCAGCTCTCTGGGGCTGCAGCGCTACACCTTGGGCCTCAGCCTCAAGGGCTGGGACAACCTGGAATATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021323 True 3399 mRNA 0.57 24 14532782 14552790

Neighbor

gene id symbol gene type direction distance location
AMCG00021322 pdzd11 coding upstream 39351 14490133 ~ 14493431 (+)
AMCG00021317 NA coding upstream 192826 14321885 ~ 14339956 (+)
AMCG00021312 NA coding upstream 335110 14179178 ~ 14197672 (+)
AMCG00021305 NA coding upstream 415516 14110458 ~ 14117266 (+)
AMCG00021306 sept6,LOC106611514,LOC107664349 coding upstream 426842 14080550 ~ 14105940 (+)
AMCG00021324 NA coding downstream 5339 14558129 ~ 14561490 (+)
AMCG00021329 sox2,sox3,LOC105029621,LOC106604738 coding downstream 42490 14595280 ~ 14596188 (+)
AMCG00021331 atp11c coding downstream 118462 14671252 ~ 14690119 (+)
AMCG00021330 NA coding downstream 143797 14696587 ~ 14731003 (+)
AMCG00021334 fgf13a,fgf13,LOC107658011,LOC107601138 coding downstream 304444 14857234 ~ 14866579 (+)
G85202 NA non-coding upstream 36933 14456628 ~ 14495849 (+)
G85185 dlg3 non-coding upstream 159225 14372720 ~ 14373557 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 380239 14109527 ~ 14152543 (+)
G85090 NA non-coding upstream 497120 14034215 ~ 14035662 (+)
G85069 NA non-coding upstream 530363 14000596 ~ 14002419 (+)
G85344 NA non-coding downstream 573977 15126767 ~ 15127233 (+)
G85345 NA non-coding downstream 574499 15127289 ~ 15127965 (+)
G85380 NA non-coding downstream 703658 15256448 ~ 15260965 (+)
G85381 NA non-coding downstream 705169 15257959 ~ 15259462 (+)
G85412 NA non-coding downstream 852986 15405776 ~ 15410610 (+)
AMCG00021292 NA other upstream 459657 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 499225 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1095374 13435307 ~ 13437408 (+)
G84749 NA other upstream 2432075 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 3545608 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 875687 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 1510709 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2037391 16590181 ~ 16592973 (+)
G85787 NA other downstream 2103854 16656644 ~ 16714038 (+)
G85869 NA other downstream 2445087 16997877 ~ 17004131 (+)

Expression


Co-expression Network