AMCG00021327


Basic Information

Item Value
gene id AMCG00021327
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14467209 ~ 14486022 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021327
CTCAAGTCTTCCCCAGTTAATCACACTAGAAGAGGTTTACTACACTTAAGTCCAAGGCCATGAGAGGCGCTCCATGACACGttaaagCTCTCACATTTCCAAGATGTCAGAACCCAATGAAAGTGAGATTATTCCCCCTATACCCAAGCCTCGTGCCCGGTACACTGCCTCAGTGGGGTTTAATACATCGCCTGTCCCTACTCCTGCTCCCAGAAGGTACAGGAGATCAAAAAGTACTTCTGATGCACTAGAGGAACCAGAGGAAAACAATTTCACTGTCGATGCAGCCCAAACTACCTCTTGGAATTTGGATTTTCTGGGAAAGAcggacaaacaaaaacaccaacaaatTCTGAATGGATACTGTAATTCTGAGCCGATCAGCAGCCCGGTCATACTAGAATCTCCACCGGACCCCAGAACTGACCTTTCTCCAGGAGCTCAAGACCAACACGATGTAGATGTCCCTCCAGGAGTTCCACAAAAGGTTCTCTGTCCTGATCTGTCAGCGTCAGGTCCAATGGAGGCCGAAATCAAATGCACTGCTGATTCCAGCTCTGACACATCAAGCGAAGAGGAACCTCTCCTTATGACAGCTTCCTCAGATTCTGAAGACAAGCTGGAACAAGACGTGGATGACGGAACAGAAACTGCACCAAGTACGGATGAATCAAGGCGATCAGAGCCCCTCCCACACTGGGGCAACTCTCCAAGTGCTCCCTGCGTGGACAGCCTTGCTGCAATGTCTGAAGACCAACAGAGACCCCCCGGTGGTGAAACTCTCTCTGAAACTCCAAAGACAAACACAGGAGTCAACATGGCACATGCTGAGCAACGCCAGAATATGAAAAGTGAGACTTCAGTGAGTTCTGTTCTGCCGTCGCAGAGATCTGAAAGGGAGGGATCTGGAGCTCAGGAGTGTGTCTCTAGCAAGGGGCAGAGCAGGACAGAGCAGTCAGCCCTAGAGTCCAGACCAAAGAAACTAAAGGCACCACGTGTCGCCACCATCCGCGTGAGCAGGAAAAAACAGGCCCTGGTGGAGTGGCAGACGAAAGGGGCATCGAGCAACACGGGGGTCCGAGACAGCGCAGTGTCCCGCTCCAACTGGCTGGACGTGTGGAAGGGCAAGAGGCACTATGTGCTGTGGGTGACTCTGGATGGAAAGCTTTTATCTTTGTGGAAGAAACGCACTGACAAGTTCACTGAGATTGTAATCCACGTGTCAAACATTACGAATGTCCAGACACTAGAGGGATCCAGATTCACAGTTTCCTCCCAAAAGAAGCACTTTGAGTTCTTGGCAAATAATGATGttGTGCGGGATGGTTGGGTGAGCTCCCTGCATGCCTCCCTGGGGCAGGACCCCCCAGAGCCCCCAAAGCAGCAGGGCCCCCTCACCATGAAGGACCCCCGGACCAAGGTGTATGCAGCCATCTGTGGACATGACCTGTGGATTTTCCGCAACAAAGAGGACTTTGGTTATGGAGTGGGCATTACCTTCATCTCCATGAATGTGGCACAGGTGAAGCAGACTGGCCGGCATGGCTTCTCTCTCATCACCCCCTACAAGACATTCAGTTTCTCAGCCGACTCCTCCCGGGATCTCACGGTGTGGCTGGCCTGTCTGACGCAGGTGATCCGCAATGCCCTGTCCTGCAGTGAGATCGCCCAGCGTGTGTGGGCCAGCCCCTGGAATAATGTGTGTGCTGAATGTGGCCTTGCCAAGCCTGAATGGGCTTCTGTCAACCTGCTGGTTGTCATCTGTGATGCCTGCGCTGGTCAGCACCGCTCCATGGGGACCAATGTGTCCAAGGTGCGCAGTCTGAAGATGGATAGGAAAGTGTGGACGGAGCCTCTCATTCAGCTTTTTGTCCTGTACGGGAATAAAGCTTCCAATGAGGTGTGGGGCTGCAACGTGCCTGCGGCTGAGCAGATCTTAGGGGATGCCTCCCCAAATGAGCGTCGCATTTACATTATGGCCAAATACATCAAGGGGCGCTACCGCCGGGCACACCCACTTGCCTCCAGCCAGAAGCTACTCAACCAGCGTCTGTGTGAAGTGGTCACTGGCCCTGACATCTCGGAGACAATGTCCTTGCTGTGCTCAGGGGCGCAAGTCACGTGCGTCCCGGCGGACCCCACCTGTCCTTCGCCCATCTCCCTGGCAGAGCGGGCGGGGCAGGCCATGCAGACCGAGCTGCTCCGACACAACGAGTTCACAGAGGCCCCAGCCTTCGATCCCAAACTGAACGAGAAAGAACAGCCACCCAGTGCTGAGCCCACTGACCACCCTGCCTCTAAAGGAGAGGAAGAGCTCCATGGTAAACTGGAGGAGGACCGCTTCCTGTTCTCAGAGCAGAATGACTCTGCAGCCTATGATGTCCTGGACCTGAGAGAGGTCATCTCCATCTTTGACTGCTCTTCTGGGTGGAACAAGGGGTGGGGCAAAGAGGCTATTGCGAAGGTGCTGCTGCCATGTGCTTTGCCAGACCTGGAGCTGGAGGGTGTACAGGCACTGTCACGAGTGTCCCTCAGGGAGGGGGGCaagctggagcacaaggacgtTTGGGCAATGCTCAGACATGACAAACTTCTGCTGTACCCCACCAAGGGGggccagggagacagggtgTTGCTGACAACATCAATGACTTGCAACTTGGGGTCTTCTGAAAACACCATTGAAGTAGTTACAGCAGACAGGTTTCTGTCATTGCAGTTTGAGCAGGAACGGTCCTGCCAGTGCTGGAACGTGCTGCTGAAGATGGCAGTGTGCTCTGCGGAGAAGAAACAGGTCGTGTACCCCAGTGCTTGTGACGGGAATGTGCCCACAGCCATCGAGAGGTGCATCTCTCACATCACACAGCACGgtCTAACTGTGGATGGTATTTACCGGCGCTGTGGCATGGTCCCCAAGGTCGCACGGCTGGTGGAGGAGCTCAGCAAGGACCCCCACAAGGTGCAATTTGAGCCAGGGGAGATAGGGATCTTGGAAACAGCAGGAGCCCTCAAAAGGTGTCTCCGCCAGCAGTCTGCCCTCATCCCCGAGTCTCACATCCCATCCTGGGTCCAGGCAGCAGCTAACCCTGTGGAGACAGTGAGAATGACAGCCTATCGGAGGGCTCTGGACCAGCTGCCAGCTGACCAGAGAGCCCTCCTCAGGGCCCTTTTCGGACACCTTTACCAAGTCCAGTTGTACAGTCATGTGAACCGGATGACAGCGCAAAACCTGGCTCTGGTGTTTGTGCCCACTCTGTTCCAGGACCTCGCCATGAGCACAGACATGGTGCGTCTAACCCGCGAACTCATCATCCACTACACACTGATCTTCCAGGGACTAACAGGTAGCCGGCATCCTGGGACTGGAGTGGTCAACCAAGTCTATACAAGACTATGAACTCACTAAGGGAGTTGAGTAGGTGGAAATTGATTTGGTGACTGTCTTCTGAGCCATGGACAAGCACAGAGCAATTGACTAAGCAGTGAGAGCCTGAGGGAGACTGAAGAATTGTGATCAACGGGATCATCCTtttccctctgtccctctgttaCGTTTAGAAAAGTTTTTTGTGATCCTAGACTTGGGGGTAGAGGACATGATCTGCACCACGGTGGAAATGGATCTGAATTTCTTCAACATTGTTCCCTCccgaattgtttttttttttttttttaattttttaatttgcattttacaaacTTCCTTTCTTTCACCACCCTTGGACAAAAGTACTGCTGAATTGTCATGGAGCACCACCCACTGAAGCACCCATCAGCCCTGCAGTTAAGCCACACCtgccaacaataataaacaagcCCTATAAAGAAACACCACCCTCTCTGCCGCCTGGCATTTTACCTGAGGAGAAGTTCAGGTGGGCATTGGGAGTGCATTCGAGCAGAGCGACCCGTGAGTGCTCTCAATTTGTCCTGTGCTCTCGAACAGGATACTGACCTTTGTTGGTACTGAGAACCCAATTTGGCTACTGACCTGGACTGGAAAATGACCATTACTTATCACGATCACTGCGTCCAAATCACAACTACAAGATGGCTTTGTGAATTGgatatttgtttgattgttttatttggaaaacCAAGTAATGGCCCGAACGCAGCCAGGGGCACAGAAATGGTGTTAGTGAGCATCCAGCTCCAGGCCAGggtttctttttccattttaagtcTTTTAAAAGCTCATTTTCAGATCCAGCACTGCAAGatctatatatgttttattatttttaattacatatacatttaaagctAAAGTTGTCATAAATGTttacatgaaaatgtttaaGGTATAATTCTTACTTGAGCCAGTTTATGTTCACAAATGTGATCAGTTAccaacaaatatacaaaatcctttttttcagAAACTCCAGAGATTAAGAGGGATTAACTGAACAGAACTACTTTTTCACTGTAAAGCATGTTCCACAAAGTGAATGTGGCTGTATCATAAAACTTACAGGAAATAGAGCCTGTTGCAAAACACCCTCTCTGACTATACACTATTCAGATAATAAAGAATGAGCTGGATTCATTGAAAAGTATGAtggtatattaaaatatgctgTGTGATTAATTTGCTGTATTACAGTTCCTGTCTTAATAAAACAGTGACTTGGTTTCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021327 True 4645 mRNA 0.50 25 14467209 14486022

Neighbor

gene id symbol gene type direction distance location
AMCG00021320 NA coding downstream 17824 14436780 ~ 14449385 (-)
AMCG00021321 NA coding downstream 35326 14409984 ~ 14431883 (-)
AMCG00021319 dlg3 coding downstream 88332 14341482 ~ 14378877 (-)
AMCG00021318 NA coding downstream 155088 14254543 ~ 14312121 (-)
AMCG00021314 cdx4,LOC107577192,LOC107665429,LOC107751993,LOC105902638,LOC107561517 coding downstream 241001 14220968 ~ 14226208 (-)
AMCG00021325 NA coding upstream 7938 14493960 ~ 14500889 (-)
AMCG00021326 rab41,rab6c,LOC106604734,LOC107560298 coding upstream 15647 14501669 ~ 14512268 (-)
AMCG00021328 NA coding upstream 29942 14515964 ~ 14522976 (-)
AMCG00021332 NA coding upstream 244536 14730558 ~ 14737743 (-)
AMCG00021336 NA coding upstream 537986 15024008 ~ 15028310 (-)
G85091 NA non-coding downstream 430564 14034224 ~ 14036645 (-)
G85089 NA non-coding downstream 433209 14029690 ~ 14034000 (-)
G85059 NA non-coding downstream 498827 13968135 ~ 13968382 (-)
G85058 NA non-coding downstream 500299 13965936 ~ 13966910 (-)
G85044 NA non-coding downstream 536928 13929842 ~ 13930281 (-)
G85251 NA non-coding upstream 63570 14549592 ~ 14554392 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding upstream 555041 15041063 ~ 15043903 (-)
G85456 NA non-coding upstream 833076 15319098 ~ 15378748 (-)
G85471 NA non-coding upstream 895330 15381352 ~ 15383931 (-)
G85470 NA non-coding upstream 945020 15431042 ~ 15432371 (-)
AMCG00021304 NA other downstream 395884 14057918 ~ 14071325 (-)
G85115 NA other downstream 415312 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 516165 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 549341 13869939 ~ 13917868 (-)
G84952 NA other downstream 839462 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 1748295 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 2161117 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 2800227 17286249 ~ 17303470 (-)
G85953 NA other upstream 2933582 17419604 ~ 17423418 (-)
G86010 NA other upstream 3061140 17547162 ~ 17552766 (-)

Expression


Co-expression Network