AMCG00021344


Basic Information

Item Value
gene id AMCG00021344
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15267040 ~ 15277340 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021344
GCGAAGCTCGAGTAATTTCTGAGGCTGCCCCGTTATTGTCCTCATGGTACTGCATTGCTATTTATAAGTGTGCAAGTCTGATGCATGCTATTACAGTCACTTACACCGTGGTGGTACAGTGTCGGCACTGTGCAGTTTAATCTTTGCACCGAGCGAGAATAGTGAGCCTTCAGCTTTACCTCAGGAGAAAAGCCCGTTTGAAAAAgtgcacattttctgtgtggACAGTGTGCGCTGGTCTGATTGGCGGTGTGGTTTGTGTCCGGTCCAGATGAGCGGCGATTCGGACGGGAATAAGGACTTCCATGAGCAGCTCCGTCTACAGCAGCTGTACGGACAGAGCCGGGAGGAGGGAAATGACCCCTACACGTTTGTGGACCCCGAGGACGGGACCGTGTACGACTGGGATCACGACAAGAAGGCGTGGTTTCCAAAGATAACTGACGACTTTCTGGCAGCTTACCACGCAAACTACGGCTTCAACCAGGAGGAGCCAGATAAGCCCTCTGCCTCCGGGGCGCCCAAGACACAGCCTGCAGCTGAGGATAGCAAGGCCAAGAAAGAACAGACAGAGGGCAGTTTGCCTCTGGATGTCACGCCAGATGAGTTTGTGGAGGTCATGTCCAAATGTGGCATCATCATGCGAGACCCAGTGACCGAGGAGTATAAAGTCAAGCTGTATAAAGACCACCAAGGGAATCTGAAGGGTGATGGACTTTGCTGCTACCTGAAGGGGCAGTACGACGCcagcaagaagaagaagaagaacaaggaatACCGCAAGAAACTCCAGCAACAGCAGAACTTGACTGGAGGCCAGAGAAGAAGCCAGGAGGACCCTCTAGTGCTGAACGAGATCCGTGAAGACCTGCGGACGGAGTGCGAGAAGTTCGGCCAGGTCAAGAAAGTCATCATCTTTGACAGACACCCGGACGGAGTGGCATCAGTGGCGTTTAAGGAACCGGAGGAGGCAGACGTGTGCATGCTGGCACTGAATGGGAGATGGTTTGGAGGGAGGCAGCTGTCGGCCGAGCTGTGGGACGGCACCACGGACTACCAGGTGGAGGAGACGAGCAGAGAACGAGAGGAAAGGCTGAAAGGCTGGTCCACCTTCCTTGGGGATGAGAAAGCAGCACAAGAGTCGGGGAAGGAGACCCCCAAAGACGGGGCTGACGGCATAGAGAAAGGGACCCCAGAGGAACCCAAGAACAGCACAGAAGAGCCCCCTAGCAAACCAGCAGAGGCAGGCACAGAGCGGCCAGAGCCCGGAGGGCCCGCGGGGGAGACgcaggaaaagaaagaggaggagcGGGAGAAGAAGGAGGCCCAGGGAAACGGCGAGGGGGATTTGGAGGAGACTGGTCTTGAGTCCACAGACAGCAGCTTAGCAGGcagcgaggaagaggaggaggagggggagcagGAGGATGAAGAGGCCTAGACAGGAGTCGCACTGACTCGATCATGAAGAAAAAGAGGGAAAACACTGCTGATGAACTTCAGTtcatattggaaaaaaaactaaagcaaaaaatgcattatgcatCAGATTTAATCATGCATAAGATCTCTTGCAATTCTGCCACTCACTGGAATCGACTCCTGCAGTATGAAGGGACAGCTCAAGAACTGATAtgtttaacacaaaataaatacaaaatcaacagagGTCCTGGAGATGGAGAATTGCTGATTTGACAACCACCTGTGTGACATAAAGATCATTTCCCCCTCCCTCTAAAGCAAAGATTGaaagcttttatgtttttttataccGTCGCTAATTTAATCCAGCCATTGGCgacttgtattttttgtgtaagTAGTGGATTAAGGGCTATTGAGAGTGCGACTGTAACACTGTATCCTGTTTTGATTTGCTAGCTAGACTGTTCCGGATCACCAAAGTCTTCATTGTTCTGGGATCTGTTCAATGTTAAAGATACCTTTCGGCAGTGTATTATTTCCTGTAATCCATTACTGAGATggtgacaaaatatataaaatgaatttc

Function

GO: NA

KEGG:

id description
K13093 HTATSF1; HIV Tat-specific factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021344 True 2014 mRNA 0.51 8 15267040 15277340

Neighbor

gene id symbol gene type direction distance location
AMCG00021342 NA coding downstream 3636 15260922 ~ 15263404 (-)
AMCG00021345 NA coding downstream 22340 15235709 ~ 15244700 (-)
AMCG00021341 NA coding downstream 60638 15202171 ~ 15206402 (-)
AMCG00021338 tm9sf2,LOC108432943,LOC105912543 coding downstream 119765 15129465 ~ 15147275 (-)
AMCG00021336 NA coding downstream 238730 15024008 ~ 15028310 (-)
AMCG00021343 NA coding upstream 3009 15280349 ~ 15282889 (-)
AMCG00021347 NA coding upstream 9885 15287225 ~ 15304732 (-)
AMCG00021353 NA coding upstream 106763 15384103 ~ 15387522 (-)
AMCG00021351 slc9a6 coding upstream 130544 15407884 ~ 15426650 (-)
AMCG00021352 ddx26b,ints6l,LOC107601122,LOC107560701 coding upstream 156700 15434040 ~ 15462050 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding downstream 223137 15041063 ~ 15043903 (-)
G85251 NA non-coding downstream 712648 14549592 ~ 14554392 (-)
G85091 NA non-coding downstream 1230395 14034224 ~ 14036645 (-)
G85089 NA non-coding downstream 1233040 14029690 ~ 14034000 (-)
G85059 NA non-coding downstream 1298658 13968135 ~ 13968382 (-)
G85456 NA non-coding upstream 41758 15319098 ~ 15378748 (-)
G85471 NA non-coding upstream 104012 15381352 ~ 15383931 (-)
G85470 NA non-coding upstream 153702 15431042 ~ 15432371 (-)
G85498 NA non-coding upstream 296286 15573626 ~ 15575997 (-)
G85530 NA non-coding upstream 473211 15750551 ~ 15755446 (-)
AMCG00021304 NA other downstream 1195715 14057918 ~ 14071325 (-)
G85115 NA other downstream 1215143 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 1315996 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 1349172 13869939 ~ 13917868 (-)
G84952 NA other downstream 1639293 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 956977 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 1369799 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 2008909 17286249 ~ 17303470 (-)
G85953 NA other upstream 2142264 17419604 ~ 17423418 (-)
G86010 NA other upstream 2269822 17547162 ~ 17552766 (-)

Expression


Co-expression Network