AMCG00021355 (LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119)


Basic Information

Item Value
gene id AMCG00021355
gene name LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15528669 ~ 15535134 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021355
ATTTTTCGATAACAATGGAACCTTATTTGCATCCCTCACTGAATCAAACGTTTTTTGGGGGGCATTTGGTGATTATATTAAATTCACAGTTGCACCCAGTTATTGGTATTGGCTATATTTTAACGCAAGCTCCTGAATTTTCAAAATAGCTGAGCATTAGCTAACCTGGTTGGGATGCATCTAAAAGTTGCAGTCCTCTGAATTTGGATTTCAATCAGTCATAGATTTTAAGTCACAATACAAGCCAGTGCTCACCATCATCAGGGAAATCTGTCCGGGTTCTGGACTGTGTCCTTGCTGTAATTTTTAACCCCTTCACTGCAACACATACGGAGCTCACTCTGTAATTAGAATGCATCTCATCAGGAATCAGCACTGGGAAGGGAGgggtgtgtgtttctgtataaaCATTGCCAGGCAGCAATGTGAAGCAAGGACAGAAGCCGTTACTGTTTCCTGTAGTCTGGACTGGAGTACGTGGTTCTGGGCATGGAGGGTCTTTGGCCTGCAGATAGGGGGTGGGTGTTAAAGAGACAGGGAAAACCTATCCACTACTACTGTGCAATCCCCTGCCCTCACCCGTGTCTCTCCTCCACAGTGTTGGACAGTGGGGCACCACAGGACCAGCTGACCATGTCGAGCTCATCAGGGCAGAAGAAAGGAGCGGCCAGGCTGCGCAAGTGTGGCTTCTGCAAGACCAACAAGGACAAGGAGTGTGGCCAGCTGCTGGTGTCGGATAACCAGAAGGTGGCGGCGCACCACAAGTGTATGCTGTTCTCCTCGGCACTGGTGACGTCTCAATCGGATGAGAACATTGGGGGCTTCTCCGTCGAAGATGTGAAGAAGGAAATGAAGAGAGGAAACAAACTGATGTGCTCCTATTGCCACCGGCCTGGGGCCACGATCGGCTGTGATGTGAAGACGTGCAGGAAGACATACCACTACTATTGCGCACTGTGGGACAAGGCCCAGATCAAGGAGAACCCCTCCCAGGGAATCTACCTGGTTTACTGTCGCAAGCACAGAGATGCTACGCAAGACTCCAGTGAAGATGAGCTGGAAGGCGTGCCCATCGATTCAGACTCCTCCCCTCCCCGGGGCCGGGGTCGGGGCCGACTGGAGAAGGGGCGGGTAAAAGCGAGCTCAAGGGGTCAGTCAGAAGACACCCGCTCCACATCTTCGCATGGCACTGACGACGTGGAGAGCGCCTCGCACCGGGATCGGTCCCCTCTGCGTAGCAGTCCGAGTGACAGCGGCCCCCGATGTGGGTTCTGCCACGCTGGGGAGGAGGAGAACGAGACGCGGGGGGAGCTGCACGGCTCCAACGCCAAGAAGGTGGCAGCCCATTACAAATGCATGTTGTTCTCCTCTGGAACAGTACAGCTCACGACCACCTCACTGGCAGAATTCGGTAACTTTGACATCAAGACTGTCATTCAGGAAATCAAAAGAGGGAAGAGGATGAAATGCACCCTGTGTGGCCAGCTGGGAGCCACCATTGGCTGTGAGATCAAAGCCTGCGTGAAGACCTACCATTACCACTGCGGCCTAGAGGACAAAGCCAAGTACATCGAGAACATGGCCAGGGGCATTTACAAGCTGTATTGCAAGAACCACAGTGGCAACGAGGAGCGAgacgaggaggatgaggagagGGAGAGCCGCAGTCGAGAGAAGGCTGGCATCGACCACGGTGGCACCATCCCACCACAGCTCAATGGCAACTAGgTGGTGTAAGAAAGGTGGGCattgaagacaaaacaaaaaaatgtacatatttttgtattgagttCCACTAGCAAAACGGGGCCAGCCATTTCTCTGTTGGTTCCCAGGTGCCTCCTCTCAGCCCCATCCCCTCCCTGACACCCCAACCCTTCCCGCCAaactacagaaacacaaacgCTTCACTCTCTTGCCTTCAACACAGATCGACGACGGATGGATTGTACCTGGGGGAGTTCGCAGTTCACAGTGAGAAGTCCAGTTTgaaaaagaggaggaaaaagaCAATGATTTTGACTCTGGTTTACTGTGCTCCTGGGTAATATTCTGTTATTGGACATTCTATTTTTGTAGAAGACTGGACATGCAGGATGTTGTGTGCTGTAGCCTGGGCTCACACCCACTTTTCTATTgttcttgaagaagaagaagaagaaacggacatgtttttttctggatACGTATAAGGAGGCAGCcattgtttcgtttttttttgttttgttttgttttttccaccatgaaatacaataatgtttCTGCTCTGTTCTCTCCAcgtgacctctctctctctctctctctctctgtttccttcttccttttgaAATcgtgtattatattttattaccttATTACTATTGTAAAGATCCGTGGCTTTCTTTATATTCGGAGGCAGGATTAAAAGTCTTCTGGTAGCATGACCTCGGAATTTTGCTACTATTAAGAGCTGCCACTTTTGTGTCTGCTTTCTTTGTGATCCTTTGAACCTGTACCATCTCCCTTCAGGGTTCCAAATTGATCTAGGATGATGCCTAAGAAAATAGCTTTTGAATACCTCCTGTGAGTCAAGGCAAAGTAAAGGGTGATTTTGAGACCCTCAACTACAGGTGAAATTCACTGATAAGAGAAACTATTTGTTATTCATCAGCAGAAtaaacacccccaccccctcaataatttgaattatatttttatcacCAATATGTCCCTGTGTGACTGAATGTGTATAGCCTTCTGTCAGTG

Function

NR:

description
PREDICTED: PHD finger protein 6-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23310 PHF6; PHD finger protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021355 True 2745 mRNA 0.49 10 15528669 15535134

Neighbor

gene id symbol gene type direction distance location
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding downstream 2486 15515619 ~ 15526183 (-)
AMCG00021356 NA coding downstream 39272 15480851 ~ 15489397 (-)
AMCG00021352 ddx26b,ints6l,LOC107601122,LOC107560701 coding downstream 66619 15434040 ~ 15462050 (-)
AMCG00021351 slc9a6 coding downstream 102019 15407884 ~ 15426650 (-)
AMCG00021353 NA coding downstream 141147 15384103 ~ 15387522 (-)
AMCG00021364 NA coding upstream 327760 15862894 ~ 15870530 (-)
AMCG00021376 NA coding upstream 467085 16002219 ~ 16008079 (-)
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding upstream 585054 16120188 ~ 16121592 (-)
AMCG00021388 rbmx2 coding upstream 674604 16209738 ~ 16212465 (-)
AMCG00021392 NA coding upstream 681302 16216436 ~ 16217455 (-)
G85470 NA non-coding downstream 96298 15431042 ~ 15432371 (-)
G85471 NA non-coding downstream 144738 15381352 ~ 15383931 (-)
G85456 NA non-coding downstream 149921 15319098 ~ 15378748 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding downstream 484766 15041063 ~ 15043903 (-)
G85251 NA non-coding downstream 974277 14549592 ~ 14554392 (-)
G85498 NA non-coding upstream 38492 15573626 ~ 15575997 (-)
G85530 NA non-coding upstream 215417 15750551 ~ 15755446 (-)
G85535 NA non-coding upstream 269602 15804736 ~ 15861947 (-)
G85543 NA non-coding upstream 328597 15863731 ~ 15903367 (-)
G85568 NA non-coding upstream 385888 15921022 ~ 15934177 (-)
AMCG00021304 NA other downstream 1457344 14057918 ~ 14071325 (-)
G85115 NA other downstream 1476772 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 1577625 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 1610801 13869939 ~ 13917868 (-)
G84952 NA other downstream 1900922 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 699183 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 1112005 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1751115 17286249 ~ 17303470 (-)
G85953 NA other upstream 1884470 17419604 ~ 17423418 (-)
G86010 NA other upstream 2012028 17547162 ~ 17552766 (-)

Expression


Co-expression Network