AMCG00021357 (hprt1,LOC105912559,LOC107601120)


Basic Information

Item Value
gene id AMCG00021357
gene name hprt1,LOC105912559,LOC107601120
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15515619 ~ 15526183 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021357
CAGTGCAGCGGCGAGACGAGCACGTAACGCATGGGCAGTGTGCGGGTATTGCCCGCTCCTCTCCGCACTGCGTTTTCGCTCGGCCCACTATTGGCCCACTGTGGAGAACAGAAACACCCCACGACCCGCAGCAACACCGAGGCGCTAGTGGTGGGCGGCgctttcttcttctcttttctctctccctccctcccctctgcaTCTAAATCATAAGCCGAACAGGGATAGCCTTGGCGGAGTAAAGACGTGTCTTGCCCGCGAACACAGTCGTGAAGCCGGGGGAAAGCGCAGTGAGCACAGCGAGGCGGCGGCATGGCGTCTGTCAGTCCCTGTGTTGTGATCAGCGATGAGGAGCAGGGCTATGACCTGGACCTGTTCTGTATCCCCAAACACTATGCGGGCGCCCTGGAGAGAGTGTACATCCCTCACGGGCTCATCATGGACAGGACAGAGCGCCTGGCTCGTGAGATAATGCGTGATATGGGAGGCCACCACATAGTGGCGCTGTGTGTGCTGAAGGGTGGCTACAAGTTCTTCGCTGACCTGCTGGACTACATCAAGGCCCTGAACCGCAACAGCGACCGCTCCATCCCCATGACTGTGGACTTCATCAGGCTCAAGAGCTACTGTAACGACCAATCCACAGGTGAGATCAAAGTCATTGGTGGGGATGACCTTTCAACGCTCACAGGCAAGTACAACCCCAAGATGGTGAAGGTGGCGAGTTTGCTGGTGAAGAGAACGCCCAGGAGTGTTGGCTACCGGCCAGACTTTGTAGGATTTGAAGTTCCCGACAAATTCGTCGTTGGATACGCGCTAGACTACAACGAGTACTTTAGAGATCTGAATCATATCTGTGTGATCAGTGAAGATGGCAaggagaagtacaaggcatgaAGAGGACCCCCCACCTCCTAGcatagtttcatttttaattattgtgcattttatatttaattttttttttttccttggtaTACTGTGTGGCAGTGGCTGCACTCACTCTCAGGCCGCACTGCCTCCTAGGACTCCAGCTCTCGTACGGCACCGGCTTCAGGGGTGAGCAAGGGGTTTGAAAGCTGAAGGCTTTTCGGGTCAGGAAGCAGAACCCAGCTGACcttcaggttttgttttgtttttataatgccAGGCATGACTGTGCAATAGAAGTTGTTTCCAATTCCATACAGTAGTACTGACCTGCAGATacaggaggggaggggggggggttaatttTAACTACTGCTGGGTGGCAGGGCCTATAATGCTCCCACAGATAATAGTTGAGTAAACTCCTCTTCTTAGGTAATGTCAAGCAAGCTGCAGAAAGTCAGAATGAAAAGACTTTCCTGTCCTGGGGCAGTAGGGTGGCACAGACCAGGGATACGTTGCCCCCATCCCATCCCTCCCCCTCACTCACCAGTTTACGAAACGGTCTCCTGCACCTCACACCTCATAGTCCTGTCTGCGAGGCACCAGCTACTCTCATGCTTCCAGCAGCCCCTGCACCTCTGCAGCACGCACTTCCAAAAATATTACCTGGAGGAGGTGGTGATGTATAAATTAAAGCCAAATACAGTCTTTGAAAGCAGTAATTTGGAGTTTACTGGACTTGATCCCTAATGTAGATATTGGAAAactaagacaaaaaaaaggctTTCTGTAAATTAACTGTGAAGGCCTTCTTccttgtgtgtatgtatgagaaCAATCAGGCACTAGACTTTGCCTTTGCGTTTCAACTCTGCCTCAGATAGACTTCATTTAGGTTAAAATTATGGTAGTACAGTACTTACATTTTAGTGAAATAGCTTTTTATAATTTtgactatttatatattttttaatgttacaatgattgaatgaatgtttaaaatgtcttcgagacaaaaatgaaatatcgGCTGTGGGATGCTGACATGGTTACAAATTGACCATGACAATCTTCTCGTCCCATGTTGTCGTTTCCTTCTTCAAGCCAAATTGAATGATGCCTTTCTTGTCTTTCATAATTGCACAATAATTTTAGGGAACAGAGCTCCTCTTGTTTCCAGCGAGACAGCTCTGTAGtaatctataaatatatgaGCCGAGTTGACTGCTGTGCATTCTATGTATATCACTTCAGGCGTGCGtacgtgcgtgcgtgcgtgtgtgtgtattcgcCTGAGTGCCCGCATGCTTGCCAACCCATTTTAACTCCTAATTAGTCATTAATTTTTGTTGAGGGTTGCAGACTGCACTTCCCTAACAAGTAGAAGTGGAGaacaagacaagacaaaacaaaactatttcatGACCAAATTTGTGTAGGTCCCATCCCACTGCAAAACTTTTACACCACCAGCTAAATTCTCCACAAGGTGCCATCAAAATGGCTGTTGCAGACATATAAACAATTGGACAGGCCACATCTCTGTAAAATGATGTGGAAATTGcaccttattttttttaactagccCTAAAAGCACACTCCTCCAATGTCAGTCCTTTATTACACTGATTGAAATGGGAGATGAAAAACTGTGTGTTGATGTATTGCCCCCCTGCcatatgtaatgtttcttttaCCAATTGCACCCTGAACCTGGGGTTTTAGGTTAGTGCAATAAAAACTCCCACTCAGACCTGAGTTCATGCTTTGATGACCTGACTGAAGTAGCATTGCATCCATTTCAGTATTGTATTATCCAaaaagttcttttttttttgggcagCTTTGTTATACAATGTTCCATCAGGGGGTCCTAtctgtatataaattattattccatgcacttttgtttttttaaaattgaaatgaattaaaatgtggaATTGCACATCTTGTGGGTGTATTTTATGGGTGCACCCACAGACGATCCTTATACCAATAAAATTCACAATGTAACAACATCTGGGACATGTGGAGCACTGTGCTGGAGCCACTGGCACTCAGAGGAGTTACACCATGACAATGTGATGAAGAGGacagcacaaacaca

Function

symbol description
hprt1 Predicted to enable hypoxanthine phosphoribosyltransferase activity and magnesium ion binding activity. Predicted to be involved in hypoxanthine metabolic process and purine-containing compound salvage. Predicted to act upstream of or within purine ribonucleoside salvage. Predicted to be located in cytoplasm. Is expressed in several structures, including digestive system; immature eye; midbrain; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in HRPT-related hyperuricemia and Lesch-Nyhan syndrome. Orthologous to human HPRT1 (hypoxanthine phosphoribosyltransferase 1).

NR:

description
PREDICTED: hypoxanthine-guanine phosphoribosyltransferase

GO:

id name namespace
GO:0046100 hypoxanthine metabolic process biological_process
GO:0006166 purine ribonucleoside salvage biological_process
GO:0006168 adenine salvage biological_process
GO:0006178 guanine salvage biological_process
GO:0032263 GMP salvage biological_process
GO:0032264 IMP salvage biological_process
GO:0005829 cytosol cellular_component
GO:0052657 guanine phosphoribosyltransferase activity molecular_function
GO:0004422 hypoxanthine phosphoribosyltransferase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021357 True 2983 mRNA 0.46 8 15515619 15526183

Neighbor

gene id symbol gene type direction distance location
AMCG00021356 NA coding downstream 26222 15480851 ~ 15489397 (-)
AMCG00021352 ddx26b,ints6l,LOC107601122,LOC107560701 coding downstream 53569 15434040 ~ 15462050 (-)
AMCG00021351 slc9a6 coding downstream 88969 15407884 ~ 15426650 (-)
AMCG00021353 NA coding downstream 128097 15384103 ~ 15387522 (-)
AMCG00021347 NA coding downstream 210887 15287225 ~ 15304732 (-)
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding upstream 2486 15528669 ~ 15535134 (-)
AMCG00021364 NA coding upstream 336711 15862894 ~ 15870530 (-)
AMCG00021376 NA coding upstream 476036 16002219 ~ 16008079 (-)
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding upstream 594005 16120188 ~ 16121592 (-)
AMCG00021388 rbmx2 coding upstream 683555 16209738 ~ 16212465 (-)
G85470 NA non-coding downstream 83248 15431042 ~ 15432371 (-)
G85471 NA non-coding downstream 131688 15381352 ~ 15383931 (-)
G85456 NA non-coding downstream 136871 15319098 ~ 15378748 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding downstream 471716 15041063 ~ 15043903 (-)
G85251 NA non-coding downstream 961227 14549592 ~ 14554392 (-)
G85498 NA non-coding upstream 47443 15573626 ~ 15575997 (-)
G85530 NA non-coding upstream 224368 15750551 ~ 15755446 (-)
G85535 NA non-coding upstream 278553 15804736 ~ 15861947 (-)
G85543 NA non-coding upstream 337548 15863731 ~ 15903367 (-)
G85568 NA non-coding upstream 394839 15921022 ~ 15934177 (-)
AMCG00021304 NA other downstream 1444294 14057918 ~ 14071325 (-)
G85115 NA other downstream 1463722 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 1564575 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 1597751 13869939 ~ 13917868 (-)
G84952 NA other downstream 1887872 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 708134 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 1120956 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1760066 17286249 ~ 17303470 (-)
G85953 NA other upstream 1893421 17419604 ~ 17423418 (-)
G86010 NA other upstream 2020979 17547162 ~ 17552766 (-)

Expression


Co-expression Network