AMCG00021370 (LOC107752047)


Basic Information

Item Value
gene id AMCG00021370
gene name LOC107752047
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15981081 ~ 15987612 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021370
ATGTGTGTGCCGTGCTCCCCTGCTGTGCCAGGCCGGAGTGTGGGCCGTGAGAGTGCAAGCACCAGTGGGCACGGCAGGCAGAGGGGGAGGCGGGCAGACAGCAGGAACCTGGCAGCCGTGGCGTGGGAGAGCTCTGTGCATCAGAGACGGCCGTCAGCACTACGGCCGCCCGCGCACTTTGCAAGCAGCTGTGTGGTGAAGGTGAATTCAGAGAAGGAGCGACCCCAGCTGCTTTGTGTAAAGGCTCTGGCCAGCAGGGGGCGCCTGGACTCGGTGacccaacagatgagctaccaCCCCCAGTACCTTGAAAGCTTCCTGCGCACACAGCACTACATCCTGCACATGGACGGGCCCCTCCCCCTGCACTATCGCCATTACATCGCCGTCATGGCTGCAGCCCGGCATCACTGCCGCTACCTGGTCTCTCTGCACTCTGCCCACTTCCTGCGAGTGGGCGGGGATCCCGTGTGGCTGCAAGGCCTGGACCACGCCCCACTGAGATTGCGCAATCTAGACCAGATCAACAAGGTTCTTGCTCACCGGCCCTGGCTCATGGCCAGGCAACACATAGAGTCCCTGCTGAAGATCGGGGAGCAGTGCTGGTCACTGGCAGAACTGGTGCAGGCTGTGGTGCTGCTGGCTCACTGCCACGCTCTGACCAGCTTCGTGTTCGGTGCGGGGGTGGATCAGGAGTCCCCTGGCCCTCCTGGCCTGCCCAGCTACTGCTTCTGCGATGCCGCCAATGGCAACGCCACCCCCCCCGATGGCCTGCGGCCCCCCTCCCGCCGAAGGTTCCTAGAAGAGCTGCTGCAGGGAGTTTACATACAAACAGAGGAACAGAGCAGAAGGCATCTGAGCCTGCAGTACGACGACTATGATTATGGAGAAGTGAACCACCTGGTGGAGCGCAGCCTGAAGCTCTACATCAAGACGGTGACATGTTATCCGGACAGAACCAGCACACAGCTCTGCCCACGCTCCTGGAAGTCCCTCAAGCCAGCTGAGAAGGTCCATGTGAACTTGCTGATAATGGAGGCCAGACTGCAGGCCGAGCTCCTGTATGCGCTGAGAGCCATCACTCAGTACATGATCGCCTAGACCCgggggaggcagggaggggaggg

Function

NR:

description
PREDICTED: sestrin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021370 True 1127 mRNA 0.62 7 15981081 15987612

Neighbor

gene id symbol gene type direction distance location
AMCG00021367 NA coding upstream 41781 15935436 ~ 15939300 (+)
AMCG00021368 NA coding upstream 49488 15927660 ~ 15931593 (+)
AMCG00021369 NA coding upstream 71525 15898157 ~ 15909556 (+)
AMCG00021371 rap2c,LOC100691801,LOC106515678,LOC107751959,LOC106676304 coding upstream 89935 15890880 ~ 15891146 (+)
AMCG00021362 mbnl3,LOC107560839,LOC107661388,LOC107658075,LOC107751960,LOC107707252,LOC108444474 coding upstream 127423 15836526 ~ 15853658 (+)
AMCG00021374 snx12,LOC107673821,LOC107733510,LOC107557076 coding downstream 23582 16011194 ~ 16016920 (+)
AMCG00021372 NA coding downstream 34746 16022358 ~ 16037784 (+)
AMCG00021375 NA coding downstream 60904 16048516 ~ 16059328 (+)
AMCG00021384 NA coding downstream 115361 16102973 ~ 16103209 (+)
AMCG00021383 NA coding downstream 118886 16106498 ~ 16107682 (+)
G85552 NA non-coding upstream 58360 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 225649 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 404563 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 418164 15561745 ~ 15562917 (+)
G85440 NA non-coding upstream 451409 15487242 ~ 15529672 (+)
G85623 NA non-coding downstream 152911 16140523 ~ 16169886 (+)
G85674 NA non-coding downstream 302137 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 560045 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 581835 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 584581 16572193 ~ 16572868 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 548717 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 1907956 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1947524 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2543673 13435307 ~ 13437408 (+)
G84749 NA other upstream 3880374 12075345 ~ 12100707 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 75887 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 602569 16590181 ~ 16592973 (+)
G85787 NA other downstream 669032 16656644 ~ 16714038 (+)
G85869 NA other downstream 1010265 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1482713 17470325 ~ 17473396 (+)

Expression


Co-expression Network