AMCG00021379 (vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614)


Basic Information

Item Value
gene id AMCG00021379
gene name vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16111308 ~ 16113420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021379
GTGCTGATCCACATCAAGCTCGGACTGCTGATGTCGATTTAATGAAGGAGGATGTGGACACCTTCATGAAGCAGCCAGGGAATGAGACGGCCGACGCAGTGCTCAGAAAGCTGGATGAGCAGTACCAGAAATACAAGTTTATGGAACTCAATCTGGCCCAGAAGAAGCTGAGACTGAAGAGCCAGATCCCCCAGATTAAGCAGACCTTAGAGATTTTGAAACACATGCAGAAGAAGAAGGAGACGACAGACCCAATGGAGACACATTTCCTGTTAGCTGATAACCTTTACTGCAAGGCGTCCGTGCCGCCCACAGATAAAGTCTGCTTGTGGTTGGGTGCAAACGTGATGCTGGAGTACGACATCGACGAGGCCCAGGCTCTGCTGGAGAAGAACCTGGCCACCGCCTCGCGCAACCTGGAGTCCCTGGAGGAGGACCTCGACTTCCTGCGGGACCAGTTCACCACCACTGAAGTCAGTATCCTTTTCCTGGTGCTAGAGTACCGCGCAGACATGGCGCGCGTGTACAACTGGGACGTGAAGCGGAGGAACAAGGACAACCCCTCCAAAAACGCAGACAAGTCTTAAAGCAGCCCAGCCCGCCCCCCCCCATCCCGCCC

Function

symbol description
vbp1 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule-based process and tubulin complex assembly. Predicted to act upstream of or within protein folding. Predicted to be part of polysome and prefoldin complex. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; immature eye; myotome; neural plate; and optic tectum. Orthologous to human VBP1 (VHL binding protein 1).

NR:

description
PREDICTED: prefoldin subunit 3

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021379 True 619 mRNA 0.55 6 16111308 16113420

Neighbor

gene id symbol gene type direction distance location
AMCG00021381 NA coding upstream 449 16110416 ~ 16110859 (+)
AMCG00021383 NA coding upstream 3626 16106498 ~ 16107682 (+)
AMCG00021384 NA coding upstream 8099 16102973 ~ 16103209 (+)
AMCG00021375 NA coding upstream 51980 16048516 ~ 16059328 (+)
AMCG00021372 NA coding upstream 73524 16022358 ~ 16037784 (+)
AMCG00021377 rab38c,LOC103035037,LOC108427929,LOC107733499,LOC107673818,LOC108278910,LOC107579578 coding downstream 12101 16125521 ~ 16131258 (+)
AMCG00021378 LOC108434851,LOC107742289 coding downstream 25431 16138851 ~ 16166160 (+)
AMCG00021380 NA coding downstream 62942 16176362 ~ 16181822 (+)
AMCG00021390 siah2l,siah2,LOC102786130,LOC101471392 coding downstream 70403 16183823 ~ 16184805 (+)
AMCG00021391 siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204 coding downstream 86525 16199945 ~ 16202371 (+)
G85552 NA non-coding upstream 188587 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 355876 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 534790 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 548391 15561745 ~ 15562917 (+)
G85440 NA non-coding upstream 581636 15487242 ~ 15529672 (+)
G85623 NA non-coding downstream 27103 16140523 ~ 16169886 (+)
G85674 NA non-coding downstream 176329 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 434237 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 456027 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 458773 16572193 ~ 16572868 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 37687 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 678944 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2038183 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2077751 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2673900 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 476761 16590181 ~ 16592973 (+)
G85787 NA other downstream 543224 16656644 ~ 16714038 (+)
G85869 NA other downstream 884457 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1356905 17470325 ~ 17473396 (+)
G86121 NA other downstream 2135070 18248490 ~ 18249686 (+)

Expression


Co-expression Network