Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00021387 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 16234317 ~ 16242655 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006810 | transport | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0044425 | obsolete membrane part | cellular_component |
| GO:0046983 | protein dimerization activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00021387 | True | 867 | mRNA | 0.61 | 7 | 16234317 | 16242423 |
| TU106928 | False | 336 | TUCP | 0.60 | 4 | 16241004 | 16242655 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021392 | NA | coding | downstream | 16862 | 16216436 ~ 16217455 (-) |
| AMCG00021388 | rbmx2 | coding | downstream | 21852 | 16209738 ~ 16212465 (-) |
| AMCG00021382 | rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 | coding | downstream | 112725 | 16120188 ~ 16121592 (-) |
| AMCG00021376 | NA | coding | downstream | 226238 | 16002219 ~ 16008079 (-) |
| AMCG00021364 | NA | coding | downstream | 363787 | 15862894 ~ 15870530 (-) |
| AMCG00021393 | LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 | coding | upstream | 114610 | 16357265 ~ 16359007 (-) |
| AMCG00021396 | NA | coding | upstream | 196781 | 16439436 ~ 16452644 (-) |
| AMCG00021406 | NA | coding | upstream | 261086 | 16503741 ~ 16504379 (-) |
| AMCG00021404 | NA | coding | upstream | 303098 | 16545753 ~ 16550094 (-) |
| AMCG00021411 | vamp7 | coding | upstream | 324484 | 16567139 ~ 16572494 (-) |
| G85580 | NA | non-coding | downstream | 213575 | 15976565 ~ 16020742 (-) |
| G85592 | NA | non-coding | downstream | 222615 | 16011231 ~ 16011702 (-) |
| G85590 | NA | non-coding | downstream | 233096 | 15993252 ~ 16001221 (-) |
| G85568 | NA | non-coding | downstream | 300140 | 15921022 ~ 15934177 (-) |
| G85569 | NA | non-coding | downstream | 304538 | 15924958 ~ 15929779 (-) |
| G85716 | NA | non-coding | upstream | 228897 | 16471552 ~ 16471759 (-) |
| G85771 | NA | non-coding | upstream | 323062 | 16565717 ~ 16566021 (-) |
| G85802 | NA | non-coding | upstream | 448912 | 16691567 ~ 16757611 (-) |
| G85824 | NA | non-coding | upstream | 565151 | 16807806 ~ 16809320 (-) |
| G85837 | NA | non-coding | upstream | 580161 | 16822816 ~ 16823079 (-) |
| AMCG00021304 | NA | other | downstream | 2162992 | 14057918 ~ 14071325 (-) |
| G85115 | NA | other | downstream | 2182420 | 14049974 ~ 14051897 (-) |
| AMCG00021302 | NA | other | downstream | 2283273 | 13948307 ~ 13951044 (-) |
| G85037 | LOC100846954 | other | downstream | 2316449 | 13869939 ~ 13917868 (-) |
| G84952 | NA | other | downstream | 2606570 | 13627335 ~ 13627747 (-) |
| AMCG00021412 | NA | other | upstream | 404484 | 16647139 ~ 16649940 (-) |
| AMCG00021435 | hdx,LOC107572093 | other | upstream | 1043594 | 17286249 ~ 17303470 (-) |
| G85953 | NA | other | upstream | 1176949 | 17419604 ~ 17423418 (-) |
| G86010 | NA | other | upstream | 1304507 | 17547162 ~ 17552766 (-) |
| AMCG00021444 | NA | other | upstream | 1338587 | 17581242 ~ 17585441 (-) |
