AMCG00021388 (rbmx2)


Basic Information

Item Value
gene id AMCG00021388
gene name rbmx2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16209738 ~ 16212465 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021388
CTACAAGGAatctaaataattacataatctCTATTTATCCGACAGCTGATAGTGTGTTAATCTGTCTCTGGCAATgtcacattctctctctctccccacttccacacctccctcctcttcctctttcttcCTCCCAGTCCCCTGACGAAAGTGAAGCTGATCAATGAACTGAACCAGCGTGAGGCGGAGCTGGGGGTGAAAGAGACGGTGTCATGGCACTCCGAGTACAAGGACAGTGCCTGGATCTTCATAGAGGGAGACCTGCTCTGCATCTTCTCACAGTACGGGGAGATCGCCAACATCAACCTGGTGCGGGACAAGAAGACGGGGAAATCGAAGGGCTTCTGCTTCATTTGCTACGAGGATCAGAGGAGCACCATCCTGGCTGTGGATAACTTCAATGGGATCAAGCTGCGGGAGCAGGGCTGTGCCCCTAggacaccccccccaccctcctccgAGTCTGAGGAGGGGGAGTACACTGTGCCCgtgaagaagcagaagaaagAGAAACAGGACCTGGGGTACGAGAAATATGCCAGTCACCCTGAGGACAGGCCCGCCCGGGGGGACAGACGCAGAGACGAGGAGCTCCGGCccggaggagagaggggggaggacAGGGTGCCCAGAGGCCCTCCAGAGGACAGAGGCCGTGAAgccagagggagggagagagagagaaacagcgACCCCTGGGGCAGGGATGAGGAgagggggggtggagagggCAGCAGCAGATGGAGAGAGGGGCAGGACAACGGAGGTGCGAGGGACCGGGGGCGAGACCACGATGCCCCACCGTTTCCCCGGGACAGGAGGGACGAGAGGCAGAGTAGACCCGACGGACGTGGCCGAGAACGGGCCCAGGCCACGGAGAGAGACCGGGACAGAGAGATGAGGAGAGACTGGGacgcagacagagagagggggagagaccGGGACGTTGACAGAGACCGAGATAAAGTGAGAGAGCGGGACCcagacagggacagagggagagagcgggACGTGGACAGAGActgggacagagggagagaacgGGCTGCAGACAGAGActgggacagagggagagagcgggATGCAGACAGAGACCGGGACAGACCTGTCAAACATAAGGAGCACAGCCGGGACCCTGAGCATAGGAGGAACTGA

Function

symbol description
rbmx2 Predicted to enable RNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and precatalytic spliceosome. Is expressed in blastodisc and central nervous system. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2).

NR:

description
PREDICTED: RNA-binding motif protein, X-linked 2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13107 RBMX2, IST3; RNA-binding motif protein, X-linked 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021388 True 1155 mRNA 0.59 5 16209738 16212465

Neighbor

gene id symbol gene type direction distance location
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding downstream 88146 16120188 ~ 16121592 (-)
AMCG00021376 NA coding downstream 201659 16002219 ~ 16008079 (-)
AMCG00021364 NA coding downstream 339208 15862894 ~ 15870530 (-)
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding downstream 674604 15528669 ~ 15535134 (-)
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding downstream 683555 15515619 ~ 15526183 (-)
AMCG00021392 NA coding upstream 3971 16216436 ~ 16217455 (-)
AMCG00021393 LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 coding upstream 144800 16357265 ~ 16359007 (-)
AMCG00021396 NA coding upstream 226971 16439436 ~ 16452644 (-)
AMCG00021406 NA coding upstream 291276 16503741 ~ 16504379 (-)
AMCG00021404 NA coding upstream 333288 16545753 ~ 16550094 (-)
G85580 NA non-coding downstream 188996 15976565 ~ 16020742 (-)
G85592 NA non-coding downstream 198036 16011231 ~ 16011702 (-)
G85590 NA non-coding downstream 208517 15993252 ~ 16001221 (-)
G85568 NA non-coding downstream 275561 15921022 ~ 15934177 (-)
G85569 NA non-coding downstream 279959 15924958 ~ 15929779 (-)
G85716 NA non-coding upstream 259087 16471552 ~ 16471759 (-)
G85771 NA non-coding upstream 353252 16565717 ~ 16566021 (-)
G85802 NA non-coding upstream 479102 16691567 ~ 16757611 (-)
G85824 NA non-coding upstream 595341 16807806 ~ 16809320 (-)
G85837 NA non-coding upstream 610351 16822816 ~ 16823079 (-)
AMCG00021304 NA other downstream 2138413 14057918 ~ 14071325 (-)
G85115 NA other downstream 2157841 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2258694 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 2291870 13869939 ~ 13917868 (-)
G84952 NA other downstream 2581991 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 21852 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 434674 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1073784 17286249 ~ 17303470 (-)
G85953 NA other upstream 1207139 17419604 ~ 17423418 (-)
G86010 NA other upstream 1334697 17547162 ~ 17552766 (-)

Expression


Co-expression Network