AMCG00021391 (siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204)


Basic Information

Item Value
gene id AMCG00021391
gene name siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16199945 ~ 16202371 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021391
ATGaggagagatagagggagagcaggagggagggaggcagggaatgagagggagaaggagagaccGAGCGAGCAAGCGAGATACGCCTCAGCGGGCTGCCTGCTGTCCCTGCACCACAGCGAGAAACCAGAGCATGAGGAGGTGTGCGAGTTCCGGCCTTACACCTGCCCCTGCCCGGGCGCTTCCTGCAAGTGGCAGGGCTCCCTGGAGGCGGTGATGCCCCACCTGATGCACGCCCACAAGTCCATCACCACCCTGCAGGGCGAGGACATTGTGTTCCTGGCCACGGACATCAACCTGCCGGGTGCAGTGGACTGGGTGATGATGCAGTCCTGCTTCGGCCACCACTTCATGCTGGTGCTGGAGAAACAGGAGAAGTACGAGGGCCACCAGCAGTTCTTCGCCATCGTGCTGCTCATCGGCACTCGGAAGCAGGCCGAGAACTTTGCCTACCGCCTGGAGTTGAACGGCAGCCGGCGCAGGCTCACCTGGGAGGCCACGCCCCGCTCCATCCACGACGGCGTGGCGGCTGCCATCATGAATAGTGACTGCCTGGTGTTCGACACCTCCATCGCGCACCTCTTTGCGGACAACGGCAACCTAGGCATCAATGTCACCATCTCCATGTGCTGA

Function

symbol description
siah2 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in negative regulation of apoptotic process; regulation of circadian rhythm; and ubiquitin-dependent protein catabolic process. Acts upstream of or within cellular protein catabolic process and negative regulation of canonical Wnt signaling pathway. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Siah2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021391 True 633 mRNA 0.62 2 16199945 16202371

Neighbor

gene id symbol gene type direction distance location
AMCG00021390 siah2l,siah2,LOC102786130,LOC101471392 coding upstream 15140 16183823 ~ 16184805 (+)
AMCG00021380 NA coding upstream 18123 16176362 ~ 16181822 (+)
AMCG00021378 LOC108434851,LOC107742289 coding upstream 33785 16138851 ~ 16166160 (+)
AMCG00021377 rab38c,LOC103035037,LOC108427929,LOC107733499,LOC107673818,LOC108278910,LOC107579578 coding upstream 68687 16125521 ~ 16131258 (+)
AMCG00021379 vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614 coding upstream 86525 16111308 ~ 16113420 (+)
AMCG00021385 slc25a14,LOC106567890,LOC107697362 coding downstream 20533 16222904 ~ 16232810 (+)
AMCG00021386 NA coding downstream 54094 16256465 ~ 16270872 (+)
AMCG00021389 NA coding downstream 86383 16288754 ~ 16289608 (+)
AMCG00021395 LOC103355350,LOC107387146 coding downstream 215852 16418223 ~ 16434076 (+)
AMCG00021394 NA coding downstream 264336 16466707 ~ 16471856 (+)
G85623 NA non-coding upstream 30059 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 277224 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 444513 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 623427 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 637028 15561745 ~ 15562917 (+)
G85674 NA non-coding downstream 87378 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 345286 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 367076 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 369822 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 381946 16584317 ~ 16584765 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 126324 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 767581 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2126820 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2166388 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2762537 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 387810 16590181 ~ 16592973 (+)
G85787 NA other downstream 454273 16656644 ~ 16714038 (+)
G85869 NA other downstream 795506 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1267954 17470325 ~ 17473396 (+)
G86121 NA other downstream 2046119 18248490 ~ 18249686 (+)

Expression


Co-expression Network