AMCG00021393 (LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059)


Basic Information

Item Value
gene id AMCG00021393
gene name LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16357265 ~ 16359007 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021393
ATGTCCATGAACAGCAAGCAGGCGTTCAGTATGCACCCTATTCTGCATGAACCGAAATACACGCCTCTACACTCCAGCTCAGAAGCTATCAGGAGGGCATGCTTGCCAACGCCGTCGCTACAGGGCAACATCTTCGCCGGTTTCGATGAGACTTTGCTGCAGAGAGCGGAGGCGCTGGCGGCGGTGGATATTGTGTCCCAGAAAAGCCACCCTTTTAAGCCGGACGCCACCTACCACACCATGACAAGCATGACCTGCACCCCCACCTCGTCCTCTGCGCACCTGCACCATCCCTCCGTGCTCACCtcgcaccaccaccaccaccaccagccgtCCCAGGGCCTGGAGGGCGACCTGCTGGACCACCTCACCCCAGGCCTGTCTCTGGGTGGCATGGCGGGGCCCGAGTCGCTCACCCTGTCCCACAATAACATGGTGGCCCTGAAACCCATCCTGGAAGCCTGGCTGGAAGAGGCGGAGCGGGCACAGCGGGAGAAGATGACCAAACCCGAGATATTCAACGGCGGGGACAAGAAGCGGAAACGCACGTCCATAGCCGCCCCTGAGAAGCGCTCGCTGGAAGCCTACTTCGCCGTGCAGCCCCGACCCTCCTCCGAGAAGATAGCGGCCATCGCCGAGAAACTGGATCTGAAAAAGAACGTGGTGCGTGTGTGGTTTTGCAACCAGAGACAGAAGCAGAAAAGGATGAAATTTTCCGCAGCGCATTAG

Function

NR:

description
PREDICTED: brain-specific homeobox/POU domain protein 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021393 True 729 mRNA 0.60 3 16357265 16359007

Neighbor

gene id symbol gene type direction distance location
AMCG00021392 NA coding downstream 139810 16216436 ~ 16217455 (-)
AMCG00021388 rbmx2 coding downstream 144800 16209738 ~ 16212465 (-)
AMCG00021382 rab39b,LOC103034714,LOC108428007,LOC108278912,LOC106602960,LOC106609056 coding downstream 235673 16120188 ~ 16121592 (-)
AMCG00021376 NA coding downstream 349186 16002219 ~ 16008079 (-)
AMCG00021364 NA coding downstream 486735 15862894 ~ 15870530 (-)
AMCG00021396 NA coding upstream 80429 16439436 ~ 16452644 (-)
AMCG00021406 NA coding upstream 144734 16503741 ~ 16504379 (-)
AMCG00021404 NA coding upstream 186746 16545753 ~ 16550094 (-)
AMCG00021411 vamp7 coding upstream 208132 16567139 ~ 16572494 (-)
AMCG00021410 LOC104920593,LOC104965768,LOC103366846 coding upstream 222555 16581562 ~ 16590609 (-)
G85658 pof1b non-coding downstream 90467 16179162 ~ 16266798 (-)
G85580 NA non-coding downstream 336523 15976565 ~ 16020742 (-)
G85592 NA non-coding downstream 345563 16011231 ~ 16011702 (-)
G85590 NA non-coding downstream 356044 15993252 ~ 16001221 (-)
G85568 NA non-coding downstream 423088 15921022 ~ 15934177 (-)
G85716 NA non-coding upstream 112545 16471552 ~ 16471759 (-)
G85771 NA non-coding upstream 206710 16565717 ~ 16566021 (-)
G85802 NA non-coding upstream 332560 16691567 ~ 16757611 (-)
G85824 NA non-coding upstream 448799 16807806 ~ 16809320 (-)
G85837 NA non-coding upstream 463809 16822816 ~ 16823079 (-)
AMCG00021387 NA other downstream 114610 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2285940 14057918 ~ 14071325 (-)
G85115 NA other downstream 2305368 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2406221 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 2439397 13869939 ~ 13917868 (-)
AMCG00021412 NA other upstream 288132 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 927242 17286249 ~ 17303470 (-)
G85953 NA other upstream 1060597 17419604 ~ 17423418 (-)
G86010 NA other upstream 1188155 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 1222235 17581242 ~ 17585441 (-)

Expression


Co-expression Network