AMCG00021395 (LOC103355350,LOC107387146)


Basic Information

Item Value
gene id AMCG00021395
gene name LOC103355350,LOC107387146
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16418223 ~ 16434076 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021395
ATGAGAAGCAGCCTGGTGTACAGGATGCCAAcaACGTGCTCGGAGCTGGATAAGTACCTGCTGCATAGTGCCTCCCCACCGGCACCCGCTGTAACCGACAGGAAGTACCGGCGGGAGAGCGCATCGGTGGTGGACGAGTACTTCTCGGAGGAGAAGCCAGCGCCCTACAGCGTCAACATCAATGTCATCCTGCCCAACACCACACACCTGCGCACCGGGCTGTACCGGCCCAACAAGCCCACCGCCCATATCAAGACAGAACCCGGGCTGGAGCCCCCGCCCCCCGTGCAGACGCTGCCCGGGTTCACCTCGGTGTTCAATGTCCCCCAGACAGTCAACAACCTCTTCATCAAGCAGGACCACAGCATGACCAACGACGACCTCCACATCGGACCCCAGCAGCCCCAAGTCTACCAGCTACCCGTCAGCAGCAATGACATCACAATGCCCCTGTCTGGCCCAGGCAGCCAATCCGGGAGCGGGAGCAGTGGTATCGGTAGCACCAGCAGCACGACCATGCACACGCTCAGCTGCGTCACCATGTCGAGCGGAGTCGGAGGCTCCCTCAAGACCTTCCATGGACCCATGAGGACCCAGGGTGGCTTTGTCATGCCCGAACAGTTTTACCACACCCAGTCTCTCAGCCTGCCCCCGTCACCCCCAAACTCTCAGCCTGGCAGCCCAGAGAACCAGCCTGGTGAGCTCATCAATACCATTTCTCCTCCACCCCCTTACCAGCCCCAACTGAAGTTGATGTCGGCTCCCTCCCAAATGCACCCCCACTTGGTGCTGATGCCCTCCCATGGGCAGGGGACCCTTAGTGGGCCCCGCTACAACCGCCGCAACAACCCCGAGCTGGAGAAGAGGAGGATCCACCACTGTGACTTCCCAGgatGCTCCAAAGTTTACACCAAGAGTTCACATTTGAAGGCACATCAAAGAACGCATACAGgggaGAAGCCGTACCGCTGCAGCTGGGAGGGCTGTGACTGGCGGTTTGCGCGCTCGGACGAGCTGACACGCCACTACCGCAAGCACACTGGCGCCAAGCCCTTCAAGTGCATGTCCTGCGGCCGCTGCTTCTCGCGCTCTGACCACCTCGCCCTGCACATGAAACGCCACCAGAACTAA

Function

NR:

description
PREDICTED: Krueppel-like factor 5

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021395 True 1131 mRNA 0.61 4 16418223 16434076

Neighbor

gene id symbol gene type direction distance location
AMCG00021389 NA coding upstream 128615 16288754 ~ 16289608 (+)
AMCG00021386 NA coding upstream 147351 16256465 ~ 16270872 (+)
AMCG00021385 slc25a14,LOC106567890,LOC107697362 coding upstream 185413 16222904 ~ 16232810 (+)
AMCG00021391 siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204 coding upstream 215852 16199945 ~ 16202371 (+)
AMCG00021390 siah2l,siah2,LOC102786130,LOC101471392 coding upstream 233418 16183823 ~ 16184805 (+)
AMCG00021394 NA coding downstream 32631 16466707 ~ 16471856 (+)
AMCG00021397 NA coding downstream 40707 16474783 ~ 16499645 (+)
AMCG00021405 NA coding downstream 84494 16518570 ~ 16520363 (+)
AMCG00021398 NA coding downstream 91987 16526063 ~ 16527195 (+)
AMCG00021402 NA coding downstream 97872 16531948 ~ 16535816 (+)
G85674 NA non-coding upstream 126030 16289749 ~ 16292193 (+)
G85623 NA non-coding upstream 248337 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 495502 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 662791 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 841705 15575549 ~ 15576518 (+)
G85746 NA non-coding downstream 113581 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 135371 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 138117 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 150241 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 152241 16586317 ~ 16589411 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 344602 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 985859 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2345098 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2384666 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2980815 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 156105 16590181 ~ 16592973 (+)
G85787 NA other downstream 222568 16656644 ~ 16714038 (+)
G85869 NA other downstream 563801 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1036249 17470325 ~ 17473396 (+)
G86121 NA other downstream 1814414 18248490 ~ 18249686 (+)

Expression


Co-expression Network