AMCG00021399 (nup62,LOC100135786,LOC106603332)


Basic Information

Item Value
gene id AMCG00021399
gene name nup62,LOC100135786,LOC106603332
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16550033 ~ 16555645 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021399
GCTTCTGCCAAGACAGCTATTGCCTGTTATATTGGAGTGACTCTTTTTCTTCGTATGACCAGTATATCATTTGAAcacaattaatttcattttcaaatagtcTGAATGTACAtcttaacaaagaaaacacgACCCCACCGGCAATGTCTCGGTCACCCTATTGCAGCAACGGGGTCCTTATGGTGGCCATGGCGCAAAAATGGCGCTGAAGCTGATTGTGTTGTCGTGCTTTTGAGAGTATAGTACCGGGTACCGCagagttttattaaatattatatatacctACAGTAAAGTATTATCGCTCTCTATAATCCATACCTCCGCAGGCTGTCAGACTGTGTGTTTGGTTGACCGGGAACGAGTGTGTGTGCCGTGATGAGTGGGTTTAACTTTGGTTCCGCTGCCTCTGGGGGGTTCAGCTTCGGGACTCCCAAGACCACAGCGGGAGTCGCGCCGGCAAACGCCTTCGGGGCCCCTGCTGTGGGCGGGGGGTTCGCGTTCGGGACCCCGGCCCAGCCTCAGCCTCAGCCTCAGGCCCAGCCCCCAGCCGCCACAAGCCTCTTCTCTATGCCAGCGCAGGGCAATGCTGCCACACAAGGGGGGTTCAGCTTCGGCACCCCAGCGCAGACCAGCGCCACAGGGACTGGCTTTGCCTTCAGTAACTCCACCCCGAAGCTCAGCCTGAATATGCCGACCACCTCCCAGCCTTCTGCCACAGGGGGGCTGTCCATGGGTGGTGGGTTGGCACCCTCCACAGGGTCTGGGTTCGCAATGGGGGGGGCCCTGACCACACAGAGCACCATGGCGCCCTCCAGTGGGGGGTTCAGCTTCGGGATGGGCACAGGGGGTCTGGGGGGAGCGACTCTGCAAGCTCAGGCTCAGGCTCAGCTTCAGCCCCAGGTCCAGGTTCAGCCCCAGGTCCAGGCTCAGGCTCAGGCTCAGGCTCAGTCTCAGCCTCAGCCTCAGACCCAAGCAATGGGGGGGTTCTCCCTGGGGGGGGGCACCGCCACCACAGCTACCTCCCAGCCCACGGGGGGCTTTAGTTTTGGAGCGGCAAAGATGCCTGCAACAGCGGCAATGCCTGTCTCCGCCCCTGCCACCTCCAGCACCGGCGCTACCATGGGAGGCGGGTTCTCATTTGGGAACAGCGCTGCTATGGCAACCAGCCAGCCCACTGCTACCCCCACACTCTCCCTGGGGGGACAGACTACAGGCCTCACTCTGGGCTCCATGACTGCAGCCTCCACAGCGTCAGTGGCCCCTGGAATCACCAGCCAGGGAACCGGCTTCTCCTTTGGGGCCAAACCCACAGCTGCCCCGGCTGCAGCCACCACAACCCCTGCTCCCCAGGCTGTCACAGCGACAGGCTCCTCCCTCTTTTCTGCTCCACCCGCAGCCTCCTCCGCAGCCAACGCCTTTAACTtgggGTCAGTTGCCACCACCCCGGCCATGACCTCTGTGGGTGGAGGGCTGGGTTTCATGCTTAAGCCTCTGGGTGCTACATCGACACCCAGCACTGCTGCCACTGtgaccTCCTCCAGTGCGGCCACTGTGTTCTCTCTGGGCCTGAAGTCAGCGGGGGCCCCGGCTGTGGGCACCATGGCGTCCAGCACCGCTACCATCACTGCCACCACCGCCACAACCGCCAGTGCCCCCCCAGTGATGTCATACACTCAGCTGGAGGCTCTGATCAACAAGTGGAGTCTGGAGCTGGAGGATCAGGAGCGGCACTTCCTGCAGCAGGCCACACAAGTCAACGCCTGGGACCGTGTGCTCATTGAGAACGGAGAGAAGATCACGTGTCTGCACAGGGAGGTGGAGAAGGTGAAGCTGGATCAGAGGAGGCTGGACCAGGAGCTGGATTTCATACTGTCCCAGCAGAAGGAGCTGGAGGACCTGCTGTCACCGCTGGAAGAGTCGGTGAAGGAGCAGAATGGCACCATCTATATGCAGAACGCAGACGAGGAACGAGAGAGGACGTACAAGCTGGCGGAGAACGTGGACGCCCAGCTGAAGCGCATGTCCCAGGACCTGAAGGAGATCATCGAGCATCTCAACACCTCCAGCGGCCCGGCCGACACCAGCGACCCGCTTCAGCAAATCTGCAAAATCCTGAACGCACACATGGACTCCCTGCAGTGGATCGATCAAAACTCCGTCCTGTTGCAGAGGAGGGTGGAGGAGGTGTCCAAGCTCTGCGACAGTCGGCGCAAGGAGCAGGAGAAGAGCTTCCGGATCACCTTCGATTGAGCAGTACTAATACGACAacacagcaaaatatatatatattaactataACATCTGTTTGAATGCAGACTTCTCCTATCTTGTAAAACCATATATAAAAGAGTTTTTCTGTTGAATGTGAATGAAGTGAAACCTGATGTTTTTTtcggaggggtggggggggtccaTTGGGTATTTGGTAAAGGGGGCCGTTTTGTTACAAATAAAGACTGGAT

Function

symbol description
nup62 Enables SH2 domain binding activity; signaling receptor complex adaptor activity; and ubiquitin binding activity. Involved in several processes, including microtubule organizing center organization; positive regulation of protein localization to centrosome; and regulation of cell cycle process. Located in several cellular components, including Flemming body; microtubule cytoskeleton; and nucleus. Part of nuclear pore and ribonucleoprotein complex. Implicated in primary biliary cholangitis and striatonigral degeneration.

NR:

description
PREDICTED: nuclear pore glycoprotein p62 isoform X2

GO:

id name namespace
GO:0005643 nuclear pore cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14306 NUP62, NSP1; nuclear pore complex protein Nup62

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021399 True 2462 mRNA 0.58 13 16550033 16555645

Neighbor

gene id symbol gene type direction distance location
AMCG00021400 cnga2,LOC103395327 coding upstream 4534 16541957 ~ 16545499 (+)
AMCG00021402 NA coding upstream 14217 16531948 ~ 16535816 (+)
AMCG00021398 NA coding upstream 22838 16526063 ~ 16527195 (+)
AMCG00021405 NA coding upstream 29670 16518570 ~ 16520363 (+)
AMCG00021397 NA coding upstream 50388 16474783 ~ 16499645 (+)
AMCG00021401 NA coding downstream 953 16556598 ~ 16561776 (+)
AMCG00021403 NA coding downstream 18283 16573928 ~ 16579544 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding downstream 80710 16636355 ~ 16642487 (+)
AMCG00021408 NA coding downstream 97795 16653440 ~ 16655886 (+)
AMCG00021415 NA coding downstream 199288 16754933 ~ 16756372 (+)
G85746 NA non-coding upstream 688 16547657 ~ 16549345 (+)
G85674 NA non-coding upstream 257840 16289749 ~ 16292193 (+)
G85623 NA non-coding upstream 380147 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 627312 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 794601 15753082 ~ 15755432 (+)
G85757 NA non-coding downstream 13802 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 16548 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 28672 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 30672 16586317 ~ 16589411 (+)
G85766 NA non-coding downstream 40556 16596201 ~ 16596902 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 476412 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1117669 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2476908 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2516476 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 3112625 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 34536 16590181 ~ 16592973 (+)
G85787 NA other downstream 100999 16656644 ~ 16714038 (+)
G85869 NA other downstream 442232 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 914680 17470325 ~ 17473396 (+)
G86121 NA other downstream 1692845 18248490 ~ 18249686 (+)

Expression


Co-expression Network