AMCG00021400 (cnga2,LOC103395327)


Basic Information

Item Value
gene id AMCG00021400
gene name cnga2,LOC103395327
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16541957 ~ 16545499 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021400
ATGGGGCTCGGGGGGAGAAGGAAGAAATTGGAAGTGTTCGTGGTCAACCCCGCTGACAACCTCTACTACCGCTGGCTGTTCATCATGGCCACCGCTGTGCTGTACAACTGGTGCCTCCTGGTGGCCAGGGCCTGCTTCGATAATCTGCAGACCTCGTGCTTCATCCTCTGGCTGGTCCTGGACTATGTGTCTGACTCCTTCTACATCCTGGACACCTGCGTCCGCCTGCGCACCGGGTTCCTGGAGCAAGGCCTGTTGGTGAAGGACCTGTCCAAGCTGAGCTCAGTGTATGTCCACACCCTGCAGTTCAAGCTGGACGTACTGTCCATCCTGCCCACTGACCTGGCCTACCTAGCCACGGGCATCCACACCCCTGAGCTGCGCTTCAACCGGCTACTCCGCTTCCCCCGCATGTTCGAGTTCTTTGACCGCACCGAGACGCGCACCAACTACCCCAACATTTTCCGCATCTGCAACCTGGTGCTTTACATCCTGGTCATCATCCACTGGAACGCCTGCATCTACTACGCAATCTCCAAGTCGCTGGGCTTCGGCTCCGACACCTGGGTGTACCCCAACGTCTCGGACACCGAGAGTGACTCGTTGTCCCAGAGCTACGTGTACTGCCTGTACTGGtccaccctcaccctcaccacCATCGGGGAAATGCCGCCGCCCGCGCGGGATGAGGAGTACCTGTTCGTGGTGTTCGACTTCCTAGTCGGCGTGCTGATCTTTGCCACCATTGTGGGAAACGTGGGCTCCATGATCTCCAATATGAACGCCACGCGGGCCGAGTTCCAGGCCCGCATCGATGCCATCAAGCACTACATGCAGTTCCGCCACGTCAGCAAAGATCTGGAGGCGCGGGTCATCAAGTGGTTTGACTACCTGTGGACCAACAAGAAGGCCGTGGACGAGCAGGAGGTGCTGAAGAACCTGCCCGACAAGCTGAGGGCCGAAATCGCCATCAACGTGCACCTGGAGACGCTCAAGAAGGTGCGCATCTTCCAGGACTGCGAAGCCGGGCTGCTGGTGGAGTTGGTGCTGAAGCTACGGCCCCAGGTGTTCAGCCCTGGGGACTATATATGCCGCAAGGGCGACATCGGCAAGGAGATGTACATCATCAAGGAGGGCCGGTTGGCCGTGGTGGCGGACGATGGTGTGACGCAGTATGCCCTGCTGACCGCTGGCAGCTGCTTCGGTGAGATCAGCATCCTCAACATCAAGGGCAGCAAGATGGGCAACCGGCGCACGGCCAACATCCGCAGCATCGGCTACTCGGACCTGTTCTGCCTGTCCAAGGACGCGCTGATGGAGGCCGTGACGGAATACCCCGACGCCAAGAAGGTGCTGGAGGAGCGTGGGCGTGAGATCCTGCTGAAGGAGGGGCTGCTAGACGAGGACGCCGGGGCCGGGGGCGGGCTGGGTGGGGAGGAGGACATGGCAGAGAAGATGGAGCGGCTGGAGCAGGCGCTGGATGGGCTGCAGACACGGTTTGCGCGGCTGCTCAGTGAGTACAGCAGCGCGCAGCAGCAGCTCAAGCAGCGCCTCACCGTGCTGGAGCGCCGGCTGCGTCGCCCCGGCAGCCCCCCGGACAGAGTCCACATAGGCTATGGCAGCCTGAGGAGCCCACAGCCCTGGGGGCACAGAGAGGACGAGAGAGAGGCCACTGAGGGGCTGGGTAACTCCCTGTCTGGGCTGACAACACCAAACTGA

Function

symbol description
cnga2 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to be involved in cation transmembrane transport. Predicted to act upstream of or within sensory perception of smell. Predicted to be located in ciliary membrane.

NR:

description
PREDICTED: cyclic nucleotide-gated olfactory channel

GO: NA

KEGG:

id description
K04949 CNGA2; cyclic nucleotide gated channel alpha 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021400 True 1719 mRNA 0.61 5 16541957 16545499

Neighbor

gene id symbol gene type direction distance location
AMCG00021402 NA coding upstream 6141 16531948 ~ 16535816 (+)
AMCG00021398 NA coding upstream 14762 16526063 ~ 16527195 (+)
AMCG00021405 NA coding upstream 21594 16518570 ~ 16520363 (+)
AMCG00021397 NA coding upstream 42312 16474783 ~ 16499645 (+)
AMCG00021394 NA coding upstream 70101 16466707 ~ 16471856 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding downstream 4534 16550033 ~ 16555645 (+)
AMCG00021401 NA coding downstream 11099 16556598 ~ 16561776 (+)
AMCG00021403 NA coding downstream 28429 16573928 ~ 16579544 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding downstream 90856 16636355 ~ 16642487 (+)
AMCG00021408 NA coding downstream 107941 16653440 ~ 16655886 (+)
G85674 NA non-coding upstream 249764 16289749 ~ 16292193 (+)
G85623 NA non-coding upstream 372071 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 619236 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 786525 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 965439 15575549 ~ 15576518 (+)
G85746 NA non-coding downstream 2158 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 23948 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 26694 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 38818 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 40818 16586317 ~ 16589411 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 468336 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1109593 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2468832 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2508400 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 3104549 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 44682 16590181 ~ 16592973 (+)
G85787 NA other downstream 111145 16656644 ~ 16714038 (+)
G85869 NA other downstream 452378 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 924826 17470325 ~ 17473396 (+)
G86121 NA other downstream 1702991 18248490 ~ 18249686 (+)

Expression


Co-expression Network