AMCG00021401


Basic Information

Item Value
gene id AMCG00021401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16556598 ~ 16561776 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021401
ATGTGCCCGCCCGCTCAGAAACTTATTAACCTGCAGCCACCAGGTTGCCATAGCAGTGCTGGCCAGGGGGAAAGTTCAGTCTCTGAAGTGAAAGAATCGGCTCCTTCGAGTGTGTTAGAACTTGGCGTCCAGGCCGCAGTGATGTCGGAAGCTGCGCTGGCTGTGTgggtgttgctgtgtgtgtccgTGACATCACAGGAGAGGTTGCAGGTTGTTTACAAACCCCCACAGATACCAGCAGAAGCCCACTTTGCAGAGTCATTTGACACAGGCTCACTAGAGAGGAGGTGGGTCCTGTCCCAGGCGGTGAagcagggagaaggagaggagaaaaCAATCAGATATGATGGGCAATGGTCAGTGGAGGAGCCTGCGGAGCAGCCTCTGCCCGGTAACAGAGGCATGGTACTGAAGTCTCCGGGCCGACACCACGCCATCGCAGCCCCCCTGCGCACAGCCTTTCACTTCCAGGACAAGCCACTTATCGTGCAGTATGAGGTGCAGTTTCAGCAGGGCATGGAGTGCGGAGGTGCCTACATCAAGTTGCTGTCTCACTCCGAGCAGCTCCACCTGCCGCAGTTCAGTGATGTCACCCCCTACTCCGTCATGTTTGGACCGGATTGCTGCGGCCAGAACCACACGCTGCACTTCATCATCCGACACTGGGACGCACGGACCGGCCAGTACCAGGAGAGACATGCCCGGCAGCCTGAGCTGGACCTGAGCGAGTACTTCACTGACCGTAGACCACACCTGTATACACTGAaTTTATACCCGGATAATCATTACGAAATACAGATCGACCAATCAGTGATCAGCAAGGGCAGCCTCCTGACGGACACCACCCTGCTTGGGGCCCCCCCAAGAGAGGTCGCTGACCCTTCGGACACCAAGCCCTCAGACTGGGATGACCGGCCACTCATCCCTGATCCCATGGTCACAAGACCGGTGGACTGGGACGAGGATGCGCCCCCGCAGATTCCTGACCCCTTAGCCCAGAGGCCCTCTGACTGGCTGGAGGAGGAGCCCCCTCTAGTGCCCGATCCCCATGCACTGCGTCCGCAGGACTGGGATGAGGAGATGGATGGAGAGTGGGAGGCACCTTGGATTCCGAACCCCGCCTGCAAGCATGTGATTGGCTGTGGCCCGTGGATCCCGCCCATGATCTCTAACCCTGCCTACAGGGGGAAGTGGAAGACCTCTATGATCACCAACCCAAACTATCAGggTCAGTGGCATCCCCGACTCATCCCAAACCCTGAATATGtagaagagggagagggggccCCTCCCGTGCGTCCGGCCCCTGTGGGGGCAGTGGGGCTGGAGCTGTGGGCGCTGACTGGTGGGGTGCTGTTTGACAATGTGCTGGTGTGTGGGGACAGGCGGCGGCCGTGGCTGTGGGGGGTGTACGTGTTCACCGTGGCGCTGCCCGTCGTCCTCTTCATCAGCTTCGTCTGGCCCGACAAGAGGTTCGGCCCACCTGACATGGATTATTACTACAAGAAGTCAGATGAGCCACAGCCGGACGACCCCGAGGAATCTGAGGAGCCAGAAGGACAGAGGAAAGCAGAAGCAAAGAGGTCATCAGCAAAAGCTGGCCTGGAAGTGAAACCTAAGCAGAAAATGACCGGGTCCTGGAGACTGCCCCACCACCACCGTCACCCCACTGAGAGCAAAAGTGGAGTCCTTCCTAGGGGCAGCAGACACACTATGAACTCCTTCCTGGAGTAG

Function

GO: NA

KEGG:

id description
K08054 CANX; calnexin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021401 True 1734 mRNA 0.59 15 16556598 16561776

Neighbor

gene id symbol gene type direction distance location
AMCG00021399 nup62,LOC100135786,LOC106603332 coding upstream 953 16550033 ~ 16555645 (+)
AMCG00021400 cnga2,LOC103395327 coding upstream 11099 16541957 ~ 16545499 (+)
AMCG00021402 NA coding upstream 20782 16531948 ~ 16535816 (+)
AMCG00021398 NA coding upstream 29403 16526063 ~ 16527195 (+)
AMCG00021405 NA coding upstream 36235 16518570 ~ 16520363 (+)
AMCG00021403 NA coding downstream 12152 16573928 ~ 16579544 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding downstream 74579 16636355 ~ 16642487 (+)
AMCG00021408 NA coding downstream 91664 16653440 ~ 16655886 (+)
AMCG00021415 NA coding downstream 193157 16754933 ~ 16756372 (+)
AMCG00021416 NA coding downstream 216806 16778582 ~ 16790852 (+)
G85746 NA non-coding upstream 7253 16547657 ~ 16549345 (+)
G85674 NA non-coding upstream 264405 16289749 ~ 16292193 (+)
G85623 NA non-coding upstream 386712 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 633877 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 801166 15753082 ~ 15755432 (+)
G85757 NA non-coding downstream 7671 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 10417 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 22541 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 24541 16586317 ~ 16589411 (+)
G85766 NA non-coding downstream 34425 16596201 ~ 16596902 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 482977 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1124234 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2483473 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2523041 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 3119190 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 28405 16590181 ~ 16592973 (+)
G85787 NA other downstream 94868 16656644 ~ 16714038 (+)
G85869 NA other downstream 436101 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 908549 17470325 ~ 17473396 (+)
G86121 NA other downstream 1686714 18248490 ~ 18249686 (+)

Expression


Co-expression Network