AMCG00021402


Basic Information

Item Value
gene id AMCG00021402
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16531948 ~ 16535816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021402
GGGGTCATGCACCGGTGACGTCACTGCCCAGGGTCGGGCGAGAGCTTTTGCAACAGGTCGTTGAACACCAAGAAGTTTATCGAAGGGcgtgtttttgGTGTTGGTCCCAGCTGCCATGGCGTCTCAGGTGTTTCTGGGGGAGGAGGGGTTGAGAGGTCGCTGCGGGGGTCATGACCTCGGCTTCACAGAGGTCATCAACCAGCAGATGCGTGTGCCGGAGCGGCTGAGGGTGGCTGGCGTGCcattggaggaggaggaggaggaggaggaaggggcaCGGGAAGACACGCCGCCTTCTTTCAGCATGCACATCCCCGATAGGATATCACTGTCAGATGCCCCCGACCTGAGCCCGCGGCCCCTCTTCCTGCCCCACCCCACCATGAGGTCCGCCACGCAGCTGAACTCCGGAACCATGGGGGCACTCTCGGACACGCCGCCTACAAGTTGGGACAGGCGGTCAGCAGACCGAGCGCAGAGAGGCTCACTCCGCAGGTCATTCAGTGACTGTACAATCTCCAGGAGCCCCCTAGCGCCCCCCAGTGCCTCCAAACAGCGGCTCCACCTGCACCCCCTCCGCAGGACAGGACCCCCTCAGTGCCCAGACTCCCCACCCCAAACCCCAGGACTCCCCCCCAGCCTGCTGTCCCCACAGAGCGTGCTCCGATCAGCACAGGAACTGGGGCAGCAGGCCACACAGCGCCTCCTGCAGATTTTCAGGCAGAAATACAACCTCAGTGTTGCAGAGCAGTGGCAGAGTCCTGAGGCGGAGGAAGGGGGTGCGGTGGAGGTCATTGTGTTGAGGAGACAGGTCAGTAAGATGAGCCGGCGGCTGGCTGGGCTGGAGAGGCAGAACATTGAGCACAGACGCACGGAGCTGCTGCTCTTCTCCCTGCTGCTGTCCGCCTGCGTGGTCAATAGCTGTCTCTGGCTGCGCAGATAACACCTCCCACAGTTGTGCAGACACACCCCATCCCTGACAACGCGCACACGCAGGACCCTCAGCAGGGCGGAGGGGCCAGGACAGCACAGCCAAGAGGCCTACTGTCTCATTCCAGCCCGACTCATTAATCAATCAGGATagGCACCAGTCACGCTGCTGTATagcctgccctgccctgccctgccagAGATCGCTAGTAACACACCCGTTGCGACTAGGACGCTGCAGCTCGCTGTGTTGGAGCAGAGTAACTGGCCCTCCTGCAACGGAAACACTGACTCTCTGAGAGAATGCATGTCTGTTGCAGTATCATTTGCTGtgagggggtgtgtgtgtgtatgtttttttttttaatatgtatagtttgtaaatatgacacatttattaatttatagaTCTATATGCTGAACATGTGTGCCCTTGCATATTGTAGAACcagacaataataattataatagtggTAATATGTTTACGAAGGAGCAGACTCAGTAAATGTGGTGCCTGG

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0042579 microbody cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021402 True 1448 mRNA 0.58 8 16531948 16535816

Neighbor

gene id symbol gene type direction distance location
AMCG00021398 NA coding upstream 4753 16526063 ~ 16527195 (+)
AMCG00021405 NA coding upstream 11585 16518570 ~ 16520363 (+)
AMCG00021397 NA coding upstream 32303 16474783 ~ 16499645 (+)
AMCG00021394 NA coding upstream 60092 16466707 ~ 16471856 (+)
AMCG00021395 LOC103355350,LOC107387146 coding upstream 97872 16418223 ~ 16434076 (+)
AMCG00021400 cnga2,LOC103395327 coding downstream 6141 16541957 ~ 16545499 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding downstream 14217 16550033 ~ 16555645 (+)
AMCG00021401 NA coding downstream 20782 16556598 ~ 16561776 (+)
AMCG00021403 NA coding downstream 38112 16573928 ~ 16579544 (+)
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding downstream 100539 16636355 ~ 16642487 (+)
G85674 NA non-coding upstream 239755 16289749 ~ 16292193 (+)
G85623 NA non-coding upstream 362062 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 609227 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 776516 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 955430 15575549 ~ 15576518 (+)
G85746 NA non-coding downstream 11841 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 33631 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 36377 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 48501 16584317 ~ 16584765 (+)
G85763 LOC105929187 non-coding downstream 50501 16586317 ~ 16589411 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 458327 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1099584 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2458823 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2498391 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 3094540 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 54365 16590181 ~ 16592973 (+)
G85787 NA other downstream 120828 16656644 ~ 16714038 (+)
G85869 NA other downstream 462061 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 934509 17470325 ~ 17473396 (+)
G86121 NA other downstream 1712674 18248490 ~ 18249686 (+)

Expression


Co-expression Network