AMCG00021407 (LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287)


Basic Information

Item Value
gene id AMCG00021407
gene name LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16636355 ~ 16642487 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021407
acagaaactcccttctacaacctgtttactttcaccaactcagcagctgaactgaattgacttcaatttaggcaaacacAAGTGCACACCAGTGTTCGGCAGCATCTGCAAAAAGGAACTCCCATCTTCAGACACTACaccatttttaattatcttaTCCAAAGTACATCTATGCAGTAGATTTAAGTTTCTGAGTTGGAAAAGATCTTTGTCAGGCATTTTGTGTCCAAAATAAGGGAAACTGCTTGGTGAGTATTATATATAGAATTATATGCATATGTTCTCAATCCACTTTTCTAAAGCAATGCAGAACCAGTGCGGCTTATGTCACAGAAAGGTTATATACTGTAATTATGATCAATCATGTGCAGCGCAAGAACTGGCATCTATACTGTGGTAAAcggtgtgtggtgggggggatgcCAGgttaaaactatgaaaataattatgaaatgttaaaatgaagaTTGCTGAGGATAATTAGACTTTAGAAACTTTTGGATTTTGTTGTATGGGAATagctttaaaatgttctgttgcAAATTAACATTCTGCAAGGTCTTTCATAGACCCAGCTCTAATCATGGACTACCCAATGTAATTTTGGGTAGagtagtgctaatcaaggtctgtgaaatcaGCCTTGACAGAATTGTTTCAGTTAAGCCTCGGTTATATTGATGCAAGCACACTTGCTGCCTGATTACAGTGGTCACTAACCCTGATGGCATGTGACCACCGTGCAGGTCCGTCCCCCCTCCTGCCGGCAGCCAGCTATGCCTGCACAGTTGACCTCGTGATACACAACACGATCCAATCAGATATTGGAAAAAAGCATGAGGGGGACTTCGTTTTCACCAGGCCTCTCCAACGTCCACAGCTGTATGTACCCTAGCGCTCCCAGTGCCATCCGCATATCCGTACTCAAGTAGAATTAGTCCCCACAAATCCTTTACGGCTCGCCCTACATCACCGTACCCAGCACTGCACCTCTCTACCCACGCACATGCCCCAATATTCTCCTGGACTTCAAgcatcttatatatatatttttttttaacacccaTGTGGTGTTATGATTCATACTGCGATGATTTGATTGCTAAGGCTATAGAGGGGTCCATGGGCTGTCCTGTGTGTACCCATGTGTTAGCCATTTGCAAATGGTGTTTCTCATTAAACTTAAGCTCCCAGGGGTATGTAAGTGCAGGTGGGTCTCGCCATGCAAAAGATCAAAGGGACTTTAAAAGGTCTGTGAGCTTTTGAGTAATTAAAACCCTGGTCActtagtttttcttctttctttccttccttgcAGTTGATGTGGAGCACTCTCATGTCCGATTCCTTGGCAACCTTGTCTTGAACCTTTGGGACTGTGGAGGTCAGGACACGTTTATGGAGAACTACTTCACCAGCCAGAGGGACAACATCTTCCGAAATGTGGAGGTGCTGATCTACGTGTTTGATGTGGAGAGCCGGGAGCTGGAGAAGGACATGCACTACTACCAGTCCTGCCTGGAGGCCATCTTGCAGAACTCCCCCGATGCCAAGATCTTCTGCCTGGTGCACAAGATGGATCTGGTGCAGGAGGACCAGCGTGACCTGATATTTAAGGAGCGTGAGGAGGACCTGAGGAGGCTGTCACGACCCCTGGAGTGTACGTGTTTCAGGACATCCATCTGGGATGAAACGCTGTATAAGGCCTGGTCCAGCATAGTCTACCAGCTGATCCCCAACGTGCAGCAACTGGAGACCAACCTGCGCAACTTTGCCCAGATCATAGAGGCCGATGAAGTGCTGCTGTTCGAGAGAGCCACCTTCCTGGTCATCTCTCACTATCAGTGCAAGGAGCAGCGAGACGCCCACCGGTTTGAGAAGATCAGCAACATCATTAAACAGTTTAAGCTGAGCTGTAGTAAGCTGGCTGCCTCCTTCCAGAGCATGGAGGTCCGGAACTCCAATTTTGCCGCTTTCATCGACGTCTTCACCTCAAACACTTACGTCATGGTGATCATGTCAGACCCATCCATACcctCGGCAGCCACACTGATCAACATCCGGAACGCCCGGAAGCACTTTGAGAAGCTGGAGCGCGTGGACGGGCCCAAGCACAGCCTGCACATGCGTATGCGCTAGGCAGCCATCCTCTCTGGCAACCCACGTTGGCCAGTAAGGCAAGGTGTGTGTTCCCAGAGGCACCCAACCAATCAGTAGAGAGCCCTGAGCtatggaggggaggggggagtggAAGTGGGAGGGGCTGACTCTGAAATTTCTCAGGCAAAAATAAACCGCCCGAGATGTGAACCATCCACGTATTACTGTCCCACTCAATCATACCTTTTCATACCGTAATACTAAAAATCTGTTATCCTATTCTTGTTGGGACAAgagactttttttctcttcagtgtttttctgttaccattttggaaatgtatcgaggcttgtgttttcatgcggatatttatataaaaaaaaaaacacattttcaaggaGAGTTAATGATTTAGTGCGTTCTGTGCGTGTCTGTACGAAGTGCATTACTTTGTTTGCCATTTAAACTTTAAGGATTATGGGGTTGAAAtaatgggtgggggggtgccCTTGGTTTTGTACCTGTGTGAAGGGGAGCAGTGTTGGTTGAGGAATCAATATGCCGCTTTTAAGAATGGTCTTGGTCCCATCAGACCGAGAATGTCTTTTGCGGCCACAGTTTCTGACCttgtgcaatttttttttttttttggactgccaaatatgcaaatgcagagagaaataaagGGCAGGCCACCTGGAGTGTGGCCTGCAGTGTTGGACTCTT

Function

NR:

description
ras-related GTP-binding protein A

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021407 True 2827 mRNA 0.46 8 16636355 16642487

Neighbor

gene id symbol gene type direction distance location
AMCG00021403 NA coding upstream 56811 16573928 ~ 16579544 (+)
AMCG00021401 NA coding upstream 74579 16556598 ~ 16561776 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding upstream 80710 16550033 ~ 16555645 (+)
AMCG00021400 cnga2,LOC103395327 coding upstream 90856 16541957 ~ 16545499 (+)
AMCG00021402 NA coding upstream 100539 16531948 ~ 16535816 (+)
AMCG00021408 NA coding downstream 10953 16653440 ~ 16655886 (+)
AMCG00021415 NA coding downstream 112446 16754933 ~ 16756372 (+)
AMCG00021416 NA coding downstream 136095 16778582 ~ 16790852 (+)
AMCG00021417 NA coding downstream 155171 16797658 ~ 16806805 (+)
AMCG00021419 NA coding downstream 189795 16832282 ~ 16833265 (+)
G85766 NA non-coding upstream 39453 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 46944 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 51590 16584317 ~ 16584765 (+)
G85758 NA non-coding upstream 63487 16572193 ~ 16572868 (+)
G85757 NA non-coding upstream 66705 16569447 ~ 16569650 (+)
G85784 NA non-coding downstream 4652 16647139 ~ 16649848 (+)
G85823 NA non-coding downstream 165319 16807806 ~ 16809314 (+)
G85876 NA non-coding downstream 394085 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 444265 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 655672 17298159 ~ 17298813 (+)
G85764 LOC103366846,LOC106930986 other upstream 43382 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 562734 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1203991 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2563230 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2602798 14016133 ~ 14033557 (+)
G85787 NA other downstream 14157 16656644 ~ 16714038 (+)
G85869 NA other downstream 355390 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 827838 17470325 ~ 17473396 (+)
G86121 NA other downstream 1606003 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2404562 19047049 ~ 19055103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_03046961_03053202 RRAGA.L, RRAGB, RRAGA, MGC78980 coding CI01000032 null 3046961 ~ 3053926 (+)