AMCG00021408


Basic Information

Item Value
gene id AMCG00021408
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16653440 ~ 16655886 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021408
ATGGATGCTGTCTGGAACCTCAGCCTCACAGTGAACGCAACGGCCACCCCGTCTCCACCGCCGGCCGGGCCGCTGTTTGAGCTGTGCACCCTGGCGCCCGTCACCGCGGCTTGTCTGCTGCTCTTCCTGCTGGGGGTTGGTGGCAACGTGGCCACACTGCTGGTCTTCCGGCTCCGCAGGGACCTGCGCACTACCACCAACCTGTATCTCTCCAGCATGGCGCTTTCCGACATCCTCATCTTCGCCGGGCTGCCCCTTGACCTCTACCGCTTGTGGAGGTACCACCCCTTCCCTTTCGGGGACTTCCTTTGCCGCTTCCAGTTCTACCTGAGCGAGACCTGCACCTACGCCACCATCCTGCACATCACCGCCCTCAGTGTGGAACGCTACCTGGCCATCTGCTTCCCCCTGCACGCCAAGCTGCTGGTCACCAGGGGGCGCGTGCGTCTGGTCATCCCCGGGCTCTGGGCGGTGGCCATGGCTACAGCCGGGCCTGTGTTCTTCCTGTTCGGCGTGGAGGGGCGGGAGTGCCGGCAGGCGGAAGCGGCGGTGCGAACAGGGCTGCTGCGTGCCATGACCTGGGTTTCCACGCTGTACTTTTTCCTGCCACTTGTCTGTCTCTCGCTGCTCTATGGCCTCATCGGCCGGAAGCTGTGGAGCACACGGAGGCAGGTCCAAGGCCCCAGTGCCCGGCAACGCGAAAGGCACCACCGGCACTCTGTCAAGATCctggGCATGGTGGTGCTGTCATTTGCACTGTGCTGGCTGCCATTCCACGTGGGGCGGATACTTTTCTCCAGTGCGGCGTGGGCGGGGCAGGAGGCCGGGTCTCTGTATGCCGCCTCTCAGAACTTCAACCTGGCGGCTATGCTGCTGTTCTACCTGAGCGCCTCCATCAACCCGGTCCTCTACACACTGCTGTCTGCCCGTCACCGCTCCGCACTGCGCTGCCTGCTGCTCCCACCGCCCCGCCCCCACACCCCCCGAGGCTCCACCCACCACAGCACGGGCACAACGCTTAGGGCCACGGAAGCCAGCACCAGCGTGTGA

Function

GO:

id name namespace
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021408 True 1050 mRNA 0.65 2 16653440 16655886

Neighbor

gene id symbol gene type direction distance location
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding upstream 10953 16636355 ~ 16642487 (+)
AMCG00021403 NA coding upstream 73896 16573928 ~ 16579544 (+)
AMCG00021401 NA coding upstream 91664 16556598 ~ 16561776 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding upstream 97795 16550033 ~ 16555645 (+)
AMCG00021400 cnga2,LOC103395327 coding upstream 107941 16541957 ~ 16545499 (+)
AMCG00021415 NA coding downstream 99047 16754933 ~ 16756372 (+)
AMCG00021416 NA coding downstream 122696 16778582 ~ 16790852 (+)
AMCG00021417 NA coding downstream 141772 16797658 ~ 16806805 (+)
AMCG00021419 NA coding downstream 176396 16832282 ~ 16833265 (+)
AMCG00021418 tbx22,LOC103376188 coding downstream 220112 16875998 ~ 16884879 (+)
G85784 NA non-coding upstream 3592 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 56538 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 64029 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 68675 16584317 ~ 16584765 (+)
G85758 NA non-coding upstream 80572 16572193 ~ 16572868 (+)
G85823 NA non-coding downstream 151920 16807806 ~ 16809314 (+)
G85876 NA non-coding downstream 380686 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 430866 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 642273 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 803607 17459493 ~ 17459941 (+)
G85764 LOC103366846,LOC106930986 other upstream 60467 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 579819 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1221076 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2580315 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2619883 14016133 ~ 14033557 (+)
G85787 NA other downstream 758 16656644 ~ 16714038 (+)
G85869 NA other downstream 341991 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 814439 17470325 ~ 17473396 (+)
G86121 NA other downstream 1592604 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2391163 19047049 ~ 19055103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008948 mlnr coding NC_007126.7 CM002899.2 2976120 ~ 2985599 (-)