AMCG00021409 (LOC108443111)


Basic Information

Item Value
gene id AMCG00021409
gene name LOC108443111
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16656644 ~ 16674176 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021409
ATGTTGGAGGTGATCCTGGTGCAGGTGAACCCTGGTGAGACATTCACTATCCGGACCGAGGACGGACACATCCAGTGCATCCCAGGTCCTGCCCATGTGCCCATGGTGTCTCCCAATGGCTCTATGCCCCCCATCTTCGTGCCCCCTGGATACATGTCTCAGGTGGTGGAGGAAAACGGCATGAGAAAAGTGGTGGTGCTGCCCCACTCTGCAGAGTTTCACCACTCCATGGGCCCCCCACCCTCCCATGTGCCGCCACCCTACCTGCACCCCCACCCAGCCATGCTGCACCATCACCATGCAGTGCTGGCAGGTCATGTAGCTGTACTCCTGCGGGATGAGCACAGCGGGACGGTACCAGAGCACCTGCGCAAGCGGCTGAAGGAGCGGGCCcacctctccccctcctcctcccccgcCCCCTCGCCACACAATGGCCATTCCAAGACACCCAcacaccaccccccaccctcccacaTGGGGTCtggaaaagacaaacacacagctgcgGCATCCCCCCCAAGACCGGCAGAACGCACAGATTCCGAGGTGGAAGTTAAGACTCTCCAGGAAGTGTTGTCTGGTGTCAGTCCACCCACGgtgtgcagtgtgtcccCACGCTCAGCTGTGCTGTCCTGGCTCTCTCCACTTGATTTGTACAACGGAGACACCAGTGAGACACCCCCCCAGTCCCCCCTATCCTATGAGCTCGCTCTGTCTTCTGGCCGTGGCTCTGACTTCAAGCCAGTCTATGTGGGGGAAGAGATGACCTTCACAGTGTCCGAGCTGCGGCCGGCCACGAGTTACCACATTAGGGTATGTGCATCATGTGGCTCTGTGAAGGGGTGCCCCTCGGAGCCTGCCAGTTTCACCACAGAGTGCAGTGCTCCCAACGACAATGGATGCAAAATTACTGGCTATCTCCTGGAGTTTGACGAGGGAAAGCCAAGTGCCTTCAAGGAGATATACTTCGGGCATATGAAACAGTACAAAGTCATCAGGCTTGCCCCTTCCACCAAATACGCCTTCAGATTAGCTGCTAAAAATGATATAGGAATGAGCGCCTTCAGCGAGGTGTTGACGTGCTGCACCTCCGgctgtgcccccccaccccctgcccctCCTCGGCTGGCCACGGCAGGGGTGTCCTGGCTGGCCCTGGAGTGGAGCGCCCCTGGCAGGCCCCAAGGGGAAGAGTCGCTCTCCTATACGctggagatggaggaggagggctCGGCGTACATTGACAGATACCTGTGTGCTGACCCGCCCCCTTCACCCCTGCCCCAGCTGAGCTGTCCCCTCATCTCCCCTCTCCCACAGGGCTACGGCTTCAAACCAAGGCACAATGGGGAGGAACTGGGCTGCACTGTGAGGAACCTCCGGAGGAGCAGCTCCTACAGATTCAGAGTGTTGGCTGCGAATGCAGAGGGTCGCAGTCAGCCCAGCGCAGCGGTGGAGTTCAGCACCAGCCCGGACAGACCCAGCCCCCCCGGCCAGCCAGCCATCAAGGGCAGGGTCCTCCCCCATTCACTGCATATCACCTGGGATGCTCCCAGGGACAGCGGCGGCTCCGAGGTCACCGAGTACTGGCTGGAAATGTGCCTGGGGCTAGAGGGTAAGACTCGCTCGGGTCTGATCAAAGCTATCGATCTGGGAGAGGAAGCCAGTGAGCTGCAGCCAGGTAGCCACTGGGAAATGGTATACAGTGGTGCAGAGACAGAGCACATCTGTGATCAGCTCACCCCGGGGACCTGGTACAGGCTGAGGGTGTACTGCCAGAGCTTGGGGGGCCAGAGCCAGCCCTCCGACTCCCTCACTGTGCAGACCGCCGCCGTGCCTCCCGGACCATGCCAACTGCTCAGCCTGGCAGGGAGGGCCAGGCCATGGGAGATACCATTGAGATGGGGTCCCCCCACCCATGACGGCGGCGCCCTGGTCTCGCAGTTCGCAGTCGAGATGTCTGACTTGGCGAAGGGGCCTCGGCGCTCGCTGTACCAGGGCTCAGAGACAGAGTGCACCGCCTCTCGCTTGTTGCCCGGGCATGTTTACTGCTTCTGGGTGAAGGCTGCTAACCAGGCGGGGtggggtCCTCTCTCGGACATGTTTGAGGCCTCCACGGCTCCCGCCCCCCCCGAGCCCTGTGCCCCCATCCAGCTCACGATCAGGACTGCCACGTCAGTGCAGGCTAGCTGGGAGATCCCAGAGTCTAATGGAGCCGAGGTGTCTGAGTTCCGCCTGGAGTGGGGGGCGGCGCAGGGCTCCCTGCAGCTGGTGTACAGCGGCCCAGCCCTGAGCCACGAGGTCCGGGGACTGGTTCCTGCCACCTCTTACTACTGCAGGGTGCAGGCGGTTAACGTCGCCGGGGCGGGGCTCTTCGGGGAGGTGGCCATGGTGACGACCCCTGCCTCTGTGCCTGCCGCCGTGCCGCTGGTGCAGGAGATGGGGGAGGAAGCTCTCCCCGCCCCACTGCCTTGCCCTTCCACCTGCCTAGCTGTGCATTGGGAGGAGCCCTGTAGCCACGGTGCCGAAATCACTGGCTACAATGTGGACTTTGGGGAACGGCACCCCCTCTCTGTGGGGAGGACCAACTACTGTGTGCTAGAGAACCTTCAGCCAGACACCACGTACAGgATCAGGGTGCAGGCAGTGAATAGTGTGGGAGCTGGGCCGTTCAGCTCCTCGCTTAAGGCCCAGACCCGGCCCCTGCCCCCAGCCCCCCCAACCCTAGAGTGCTCAGTCTCTGGCCCCCAGAGCCTGAAGCTCAAGTGGGGGGAGGGCCTGAGCCGGCCCTCAGCACTGAGCAGCACCACACAGTACTGCCTGCAGATTCAGGACGCCCAGGGCAGGTTTGTGTGTATCTACAGCGGGCCGTGCCACAAGTATAAAGTGCAGCGTCTGACACCCAAAATTCAACAGCTGGAACCGAATGTGTGTGAAGTCACATGGGAGGGGCTGCAGCCAATGAGAGGAGACCCCATTGTGTACACGTTGCAGTTGGTGCGGGGCAGGGAGTCTGAGCAGTTGTACCGAGGCAAGGAGACGTGGTTCGTGCTGCGTGGGGCAGTGGCCACAAGCGAGAGGCGAGTGCGGGTGTGCGCAGGGCGGCAGTGCCAAGAGGGCAGCGGGGGCACCGGGGCAGGAGGGGGTGGTGTGAAAGAGCTGTGGGGACAGTACAGTCCCAGCACTGCCCTGCCCAGCCCTGAGCCACAGGGCCCCACTGAGGGGGGCACGGGAGCCATGGCCAGGCAGGAGGGCCCAGCCAGGGGAGGCTCCAGCAAGGATGAACATTTAATTCTGCTCCTGCTGCTGGGCTTTGCCGTGTTGGCCTTCCTCTTTGCCGTGCTCATCCAGTACTTTGTCATCAAGTAGGTCAGCTCCTGCACTAACTGCCCTGGCTTGTTTACatgccacacacagacactcagccTCCAGCACAGCCACAGTAACACAGTAATAGAATCCCAAACAGGAGCCTCTTCACCTGTtcgctttctgtttttattattttaaaatattattattattattattattattattattaagattatttcatattttttaatagcaaAAGGTacttgtttgtattattataattataattattatttttgtgttttattttgtattccttccCTCAGTCGCACCGATCGTGGCGGTATTTTGAGTGTTCTCTGTGCTCTGTGGGAGGTGTGTTGAGCTGCCTTAGAAACACAGTGTTGGAGTGGGTCTCAGCTGGCCTGTGTGCAGGGCAGTGTGGCAGGCTGGCTGTGTGATCCAGAACACtctacacgcacacacgcacacacactcacacacaaacatgcacgcacacacacacacacacacacacacatacatacatacatacactcccTAAAAAGCTTACTGtcaaataatatgaaattaaacatatatgtatgtgcacaaatgtgtttgtgtgtgtgcatatagatatagatatataaatatatatatatttttttaatatatagtgagggaaagGCATTCCAAATTGAGAgctttatatactgtacttgGTCTGACATGGTGTCTGTGAATTACACATCTCctatctataatatatattatctatatttACTAGACAGTGCCAAAGTTTTTCTACAGGAGATTCTTATGTTCTGAGAGGAATGTTGTGAATGGGAGgttggaggggtggggggttagtCTCTATTCATTTTTAAGGTGTGTTAAGGTGCTTGTAAAGACCCAGAACACTACAGTTTCACTGTGGTTGTACTATTTCTAAGGAGAAAACAGGAATCTGCCTGAGGATCTCCACCTCTCTGTGCAGAATCCAGTTCTACTAACTGCCTGACATATATCAACATCCACAGAAGTagattttacctttttaatttagtatttgcTTTGCTATtgcctgtatgtatgtatgtatgtatgtatgtatgtatgtatgtagatgtcagtgtgtgtatgtgtgtatatatattaatgtatatagatgtatacacaaacacatatgcGAAATATGACAGAATGCATTTCttataaatgtttcacaattTGGCTCAAACTGAGCAACACAATATgttggtgtgtatgtgtgtttgtttggcaGTTTTGGGCTTTACACAGGCGCTCGTATCCAAGCCCCATAAGGCTTCTCAATGTTGAATGTCAATTTGCTCTGTTCGTTCCTCAGTGCAGTTGGTGCAGAAGCCTGCAggatgtgaaaatgtttttccttgacTTCTAAAATACAAATCCACGGCAGGTTTTTTGTGTTCCTGAAGGCCTCAGCCTAAACGGTGCTTGCCCACTGTGCAGGTGCTCGATAGGCAACATGTGAACTTCATTTCATGGGCTTCAGACTTGTTAATTTActttctgcagttttgtttgttacttCTAGACAGTTATTGTGTGTGCGcacatgcctgtgtgtgtgcccGTGCACAGGAGTATGTGCAGTTGTGTTGGAtaagttgtgtattttttcatttttatattcagaATAGTTCACATTTGCAGTAACTGTTTCTATGGGTTTTGTCATCTTGGTCTTTTGCTGTTCACTAATAATGCGTGTATGTGGCATGTGCCTGCCCTGGGGCATGGGTGTTGCTAGTGGCACCTTCTGTGCAATATCATGTGGGTAAACACTGCGATTGGCTGCTCTCCAGGCAGGGCCCAACAGCAGGTCAGTCCCTTGTTTATGAAGCTGACAGTGTGAGCGAGAGAACCCGCTCCGAAATATTTAAACCAAAGAAATGTGCACAGGGTCCTGAGCAGCGTCTGTCGTTCTGTACGCCTCACTCTTTCAAGACGTTACTTCAAAGATTTTTGTGCAAAATTGAGCATGACTCACTGTCCCACAACCCCAAGACCACCCCCCCCCAAGCTggttttacaattttatttattcatgaaggaaaaaataattttcccAAAATGCTCTTTTCACACACACTAGTTATATCTTGCTGCAGGAACACCTTACATTTGTAATTGCCAAGTTGTGAGTGTCAGTTTCTCAGCACTTAATACCTGCCTGGCTTCCAGTCCTGTACCCCCAGCCCCCCCTGTCACTGTACTGGGCTGGatctgtgtttctgtcagtGGTTCGCTGTATTTATGCCAGTGGGAGTTTGGTGCCAGCCCTAATTTATCTTGGACCCTTATTTATGTAATTGGATTATCAATCTTCAACCACTGTCAAGACAGGACAAATGaataaagagagacagacatagAGAAACGGGTGCCAAGACAAGAGAGAGTGTGTAAAAAGGCCTGGTTAGTTTTTTTGAGACGCCTAAAAAATCTTCTCCTTTCAAATTGAGAGCAAGCACATGACTTTATCCTTCAAGACAttgaaacctttttaattcttatattttaatatctggttgtctttttgtttttgttcagtttgtttttttaaaacacattttaaataaacagccaACCCCCAGGCCCCTGTTGTATGGTAGGACTCAGTAATGTCACTTTGTTcttaatatttatgtttgccATTAAGAAGTCTGTTCTGTTATTCTTTTTACAGGAGGTCTGAGTGTGTAATCTGTAATCTAATCTGTGGCTTTATAATCATGCTGATTAATTGTGATTTGAGCTTGTTCCAGTAAACTAGTCAGGGCAACAAAAAAAGACTGTTTAATGCACTAACTTTATCTTCATGGCATTCTCACTGTTTACATGCCCTTGTCTGGTGATGCGTCTGCTTTCTTACGCCACGTTGCCGTTTGATTCCACACTGCAGAGGTTGGTGCGGCTGGATAATGACGACATTGAATCATTCCAAAGATATATTTTCAGCAGTTTTctatatgttatttaaaatcaaacatgaagcttttattatgatttttatgatgatgatgatgatgattatgattagtattattatattactttgtactttttttttttttttactcttggAGTTGCAAAAGTATACCTATTGAATGTGCACACGCAGGCTGACAAATCCATACTGGTCTCACTCATTGAATGTGAAGCAGGAACACGCACACGTGCACTGCTTAGACACACGACACTGGTAGCTCAAGGAAGATGATTGTGCAGCATTCCATGATTAGGGTGACTGTCTGTTTAAGCTGGTCCTTAAGGTCAGGCTCACCTTGGTATGATGGAGCTCAAGCccacccacaatgcactgctttCCAACAGATAATTCAAGCTGCTAACGAGAATGTTAACAAAGATCTTTAATCCataattggtaacactttacaatgatGGCCACcaatctgtaattaattaatgtatgaattacACAGGAATAACATCACTAAGACCAAATGCATTTCCACCGAGTTCTGATGTTTTGTGGATCACATGTAGAAGCCCCTAACCCCGAACCTCGTCTGTCACCCCATTCCCATTCCCTAACCCTGACCATCACCTTGTTATACATGCAGGAAGCGCATGAGGTATtgatgtgttattcctgtggaaGACAGGATCTGTGTAATACTCCTGAGCTTCCAAGTCAGGATACACCTCTTCCCACCGCAACACCATCGCCACAGCCACAACGCACTTTTCCTCCTAGCCCGTGCCAGAGCAATACCTTTGCGAAACTGGGAGACCCCTTcagcacacagccacacacgCAGGGCAGGGGGGAGTTCCACAGGCCTGTCTCTCGGCCTGTGCTGGACGTTTTGAGAACGGCAAACTACATCATGGTTGTGTGCAGGCAATGCTGGGTCCTTTCTGTAGATCTTCAGAGACTGTTGCCTTTTTATCATAAGCCTGCTATCTTGCCTTCTCAGTAgctaacagtttttttttcccaaatacaCAGTTCATCtgttctgtttccttttttttttttaagagttgtcttttgtgtttgtttgtttgtttgtttgttggactggttttaaaaaaaggtgTGATACATTCCAAAACCAATGTACTTTATTGGTATTAATTGTCATTTGtggctttgtgtttgttctttttttaatttttcatgtcATTAAGCGTTCTGTCGAAGCGTGTCATTAACTcgtgacaaaaaacaaacaaaaaactgccaTGCATCATGTATTACTAAATTGTAACtatcataaataatatatttaatatggcAAATAAATGATAGTCCTTATATATTA

Function

NR:

description
PREDICTED: fibronectin type-III domain-containing protein 3A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021409 True 7658 mRNA 0.50 26 16656644 16674176

Neighbor

gene id symbol gene type direction distance location
AMCG00021410 LOC104920593,LOC104965768,LOC103366846 coding downstream 66035 16581562 ~ 16590609 (-)
AMCG00021411 vamp7 coding downstream 84150 16567139 ~ 16572494 (-)
AMCG00021404 NA coding downstream 106550 16545753 ~ 16550094 (-)
AMCG00021406 NA coding downstream 152265 16503741 ~ 16504379 (-)
AMCG00021396 NA coding downstream 204000 16439436 ~ 16452644 (-)
AMCG00021413 NA coding upstream 34218 16708394 ~ 16709440 (-)
AMCG00021414 NA coding upstream 46613 16720789 ~ 16732937 (-)
AMCG00021420 itm2a coding upstream 168587 16842763 ~ 16850257 (-)
AMCG00021422 chmp1b,LOC101476317 coding upstream 225200 16899376 ~ 16908983 (-)
AMCG00021428 NA coding upstream 320370 16994546 ~ 16995556 (-)
G85771 NA non-coding downstream 90623 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 184885 16471552 ~ 16471759 (-)
G85658 pof1b non-coding downstream 389846 16179162 ~ 16266798 (-)
G85592 NA non-coding downstream 644942 16011231 ~ 16011702 (-)
G85590 NA non-coding downstream 655423 15993252 ~ 16001221 (-)
G85802 NA non-coding upstream 17391 16691567 ~ 16757611 (-)
G85824 NA non-coding upstream 133630 16807806 ~ 16809320 (-)
G85837 NA non-coding upstream 148640 16822816 ~ 16823079 (-)
G85889 NA non-coding upstream 395668 17069844 ~ 17071130 (-)
G85904 NA non-coding upstream 412546 17086722 ~ 17087718 (-)
AMCG00021412 NA other downstream 6704 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 413989 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2585319 14057918 ~ 14071325 (-)
G85115 NA other downstream 2604747 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2705600 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 612073 17286249 ~ 17303470 (-)
G85953 NA other upstream 745428 17419604 ~ 17423418 (-)
G86010 NA other upstream 872986 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 907066 17581242 ~ 17585441 (-)
G86049 NA other upstream 1251923 17926099 ~ 17926708 (-)

Expression


Co-expression Network