AMCG00021410 (LOC104920593,LOC104965768,LOC103366846)


Basic Information

Item Value
gene id AMCG00021410
gene name LOC104920593,LOC104965768,LOC103366846
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16581562 ~ 16590609 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021410
ATGAAGGCCACGCTGCTGCTGTCCCTACTGGTGCTGTACCTGGGGGGCTCAGCAGCCACTCGCTTCCCTCGTGACACCACGCAGACGAGTCCCAGGGAGAACGCAGGACCGGTGGGCGCGGGAGTGGCGGCAGCTGTGGAGGTGGCTTGGAACAGCTCCTCGGACGTCCCTGCCaaacccccgcccccccgcatTGGCCCTTACCCCCCCATGTGCGTGAAGCCCACGGAGATCAAGCACGCCTTCAAGTACATCAACACCGTGGTGTCCTGCCTCATCTTCGTGGTCGGCATCATCGGGAACTCCACCCTACTGCGCATCATCTACAAGAACAAGTGCATGCGCAATGGCCCCAACGTGCTCATTGCCAGCCTGGCTCTCGGAGACCTGCTCTACATCCTCATTGCAATCCCCATCAACGTCTTCAAGCTGTTGGCAGAGGATTGGCCTTTCGGGGTGCATATCTGCAAACTGATGCCCTTCATCCAGAAAGCCTCAGTAGGCATCACGGTGCTCAGCCTGTACCATGCAGTGACGTCGTGGAGCCGGGTGAAGGGGATGGGGATCCCGCTGTGGAAGGCAGTGGAGGTGACACTGATCTGGGTGGCGGCCGTGGTGCTGGCCGTGCCCGAGGCCATTGCCTTTGACATGATGGAGACGCCCTACAGGGGCAGCAAGCTCCGCGTGTGCCTACTGCACCCCCAGCAGAGCTCCCAGTTTATGATGTTCTACCGGGATGTGAAGGACTGGTGGCTGTTTGGCTTTTACTTCTGCCTCCCGCTGGCATGCACCGGCGTGTTCTACACCCTGATGTCCTGCGAGATGCTGAGCCTCAAAAACGGGATGCGCATCGCCCTCAACGACCACATGAAGCAGCGCCGAGAGGTTGCCAAGACGGTGTTCTGCCTGGTGGTGATCTTCGCACTGTGCTGGCTGCCCTTGCACCTCAGCCgcatcttgaagaaaaccatcTATGACATGAACGACCCGAACCGCTGTGAGCTGCTCAGCTTTCTGCTGGTGATGGACTACATCGGAATCAACATGGCCTCCCTCAACTCCTGCATCAACCCTGTGGCCCTCTACTTTGTCAGTCAGAAGTTCAAGAACTGCTTTAAGTCCTGCCTGTGCTGCTGGTGTCAGAGGCCCAACAGATGCAGCGTGCCCACAGACGACCGGGGCTCTGGGATCCGCTGGAAGGGCCACTGTCACGAGAACGGCCTGGACCGGAGCAGCTCGCGGTCCAGCCACAAGTACAGCACCTCGTAAACGGATCTGGTGGTTCATGTGGGGGGGGCGTGGGTGACCAGAAGACCACAAACCCTGCTCCTTTTCCcttacaccccccccccccgaaccCCTCCAACTCCTCCGCACCCCAGCCCTGTTCTGCCACATCAAACCACTCAGACTAGCAGGCTATAAATCACACTGCTTCTCAAAAGAGGAGGCTGAACGAGTCATACTCACGAGGAGCAGCTAAACTTGGGATGCTCCCTCAGTTGGCAAAACTGCAAATGGATCTGGACCGGACTCGAGATACGGAGCAACACTTGAAAAAgttatacagaaaatgaaatatacaaagaaacagcaatacaaatgttgaaaacaaaggaaGATAAACGCTGCACAAGACAATTTTTTGCAGGCTGTGAGCAATGTCACTGACCTGCACTTTAGTCACTGGAAATACATAGAcagtgataaatatatatagcttgtttttttagtttttttaattctcacaCATGCCTGCCCACACACGGCAAAACTCATACTTACACATTCCAAAGTGCAGCACAAAAATACATCAtagcatacaaacacacacacaatcacagctGCCCAATGCCcttacacagcacagcacaaaacacacataatttGTCGATCAGGCTCACTCGAGACTCTCGGCACTCCTGGAGAAGAACACCTCGACGAGGCTGGACACAGgtcactgcaggacacacaaaGGAGCGTGTGACACTTCATTACAGCGTGGGCGCTCCAGATCCACAGAGACTGACAGGCTACCATCCACAGACTTCACACAACAGCCACCGTGAGCAAGACTTCTAACTTCAAAGATTAAAGAGCGCATTAATTCCGCTCTGGCACTGCTTTTGTACAGAAACCCCTGAAGGGACTTGGATgagagaatttattttaaagcactatatttcaaatacatatagatataaaataaCTTGCGGTTTTATCATAAAACGCACACAGACAAATACTGCCGTTCACTGAACTAAAACGTTTTTATTttcgtttattttttcatgttacGTTGTCTCTGTAAAATAATCTCAATGTTAGGTGCACCTGTATTTCCAAGCTGTATCAACATGATATTTTCAGTATGAGAGAAAATGCAGATTACCCACAATGCTCCAGATTCTCACTGGAAGAGAGCTGGCTCAGAAATGCACCATCAAACTGGGTCAAGATAAATACAACAGCAAatttggaggaaaaaataagagaacagctggaaaacatacaaaatggcTTTGAAACAGGATCACAATCAGTGTTCAACACCCCCTTTCTCCAGGCCACTCATCCTGAGATCAGacgttattttgttttttgggctAAACTGAACCGGGTGGGTGCAGATTCCAGATAGGCATTTACAGGAAACTACAGTACTCTCCCTGTAGGACCCCCCCCCGGCACTGCAGTGGTCCTCAAAGCTGTGCCTGTGAGCATTTTGTACAAGTATTAAGGGgctggggtggtgggggtgatTGATTAAATTGATAGATTGCAGAaagtacagaaataaataaataaagatgacaGAATTGAGTGCTTCACTTCACACCTCTCCAGGGAACTCAGAGAAAGCCAGTATTTGCACACAGTCGGGTGCTTTTGAGGACCACTGTACCCCAGTATGAGTCTCAGAACCAAGGCTGAACATGATCCATCATGCATGCAGCAGACAGTGCTGGCATGCAAGAGAGGGCAACCACTGAGCCCCCAGCTGTGAACACACACTACCCCGCCatgcagcattttaaatgtttgttgaTTTGCCCTCTTTATATCAGGAGGGCCCAATGTATTCCACTTTAAACTATGTTTGAAGGTATAAaggtatatattgtatacttatagatttgtttttgttcatgtcTGAAAAAGCCAaagatgtttattaaaaaaatatatatattataattaaaacctCAGAAGCTTTTTATACGGTCTGTCGGTGTGGTTTTGACACAAGACCACCCAGCAGTGAAATAAATGCTATTTTATCACAGCTCTGCTCCCAGCATTCTTTTCATTCTGCAAAATCAAATGGGACTGATTAAATAGAACAGTTCAGTTTCTTGTTTTGGTCTTTTTGCAGGCGCTGCAGGCTGGCCTCGTCGGGAGTAAACAGCATTCCTTAAATCAAGAAACCTTGAGATGCCATAACTCAATTTATCGATTCCGCATGAATGGGGTGTGGGTGGGGGTTGGTCATCTATTGTACTGCACACGTTGCAATAGTTACAATAAGTACAATTCCTCCCTAGAGTGGTCAGATTGGCAGGAGAATGAGGTTCCTTGACAAGCTGATTCAAAGGGAATATTATTATGTTGGCTATAACTGATGGCCCAACCTAATTACATTCTTCTctcaaaagcaatacattttagaagCTCAGAGATGACagattttcctttcctttttttattttgtattcccc

Function

NR:

description
PREDICTED: endothelin B receptor

GO:

id name namespace
GO:0086100 endothelin receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004962 endothelin receptor activity molecular_function

KEGG:

id description
K04198 EDNRB; endothelin receptor type B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021410 True 3719 mRNA 0.48 7 16581562 16590609

Neighbor

gene id symbol gene type direction distance location
AMCG00021411 vamp7 coding downstream 9068 16567139 ~ 16572494 (-)
AMCG00021404 NA coding downstream 31468 16545753 ~ 16550094 (-)
AMCG00021406 NA coding downstream 77183 16503741 ~ 16504379 (-)
AMCG00021396 NA coding downstream 128918 16439436 ~ 16452644 (-)
AMCG00021393 LOC106603592,LOC106567886,LOC105023927,LOC107587290,LOC103395138,LOC100711063,LOC102300059 coding downstream 222555 16357265 ~ 16359007 (-)
AMCG00021409 LOC108443111 coding upstream 66035 16656644 ~ 16674176 (-)
AMCG00021413 NA coding upstream 117785 16708394 ~ 16709440 (-)
AMCG00021414 NA coding upstream 130180 16720789 ~ 16732937 (-)
AMCG00021420 itm2a coding upstream 252154 16842763 ~ 16850257 (-)
AMCG00021422 chmp1b,LOC101476317 coding upstream 308767 16899376 ~ 16908983 (-)
G85771 NA non-coding downstream 15541 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 109803 16471552 ~ 16471759 (-)
G85658 pof1b non-coding downstream 314764 16179162 ~ 16266798 (-)
G85592 NA non-coding downstream 569860 16011231 ~ 16011702 (-)
G85590 NA non-coding downstream 580341 15993252 ~ 16001221 (-)
G85802 NA non-coding upstream 100958 16691567 ~ 16757611 (-)
G85824 NA non-coding upstream 217197 16807806 ~ 16809320 (-)
G85837 NA non-coding upstream 232207 16822816 ~ 16823079 (-)
G85889 NA non-coding upstream 479235 17069844 ~ 17071130 (-)
G85904 NA non-coding upstream 496113 17086722 ~ 17087718 (-)
AMCG00021387 NA other downstream 338907 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2510237 14057918 ~ 14071325 (-)
G85115 NA other downstream 2529665 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2630518 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 2663694 13869939 ~ 13917868 (-)
AMCG00021412 NA other upstream 56530 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 695640 17286249 ~ 17303470 (-)
G85953 NA other upstream 828995 17419604 ~ 17423418 (-)
G86010 NA other upstream 956553 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 990633 17581242 ~ 17585441 (-)

Expression


Co-expression Network