AMCG00021420 (itm2a)


Basic Information

Item Value
gene id AMCG00021420
gene name itm2a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16842763 ~ 16850257 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021420
ATGGTGAAAATCGCCTTTAACTCCGCTCTGGCGCAGAAGGCTCTGGGCAAGGAAGGCGAGGTTCTGGTTACCGAGAAGGATCCCGAGACTGCATCGGTGTACAGCAACGAGAACTCCACCGGCCGCTGCCTGCTCACCCTGCTGGGCCTGGCCTTCATCCTGACCGGCCTGATCGTCGGAGGGGCCTGTGTCTACAGGTACTTTGCACCCAAGAAGCTGTACCATGGAGGCATGCACTTCAGTGAGCTGGACACAGAGTCCCGGGAGCCCTACTACCTGCCCCGTGTTGACGAAGAGGTGGAGATCAGAGACAATGTGGCCATCATCAACGTGCCCGCCCCACAGTTTGCCCAGAGTGACCCTGCCGCCATCCTGCACGACTTTGACaggAAATTGACGGCCTACCTGGATCTGAGCCTGGACACCTGCTTTGTGATTCCGCTGAACACCTCTGTGGTCATGCCTCCCCAGGATCTGCTGGACCTCTTCATGCAGCTCATGACCGGCTCCTACAAAACCTACCTGATCCACGAGGACCTGGTTGTGACCGAACGCATCGACGATATCGCCCAGCTCGGCTTCTACATCTACACCCTTTGCGATGACAAGGACACCTACAGGATGCAGCGGCGCAACGAGCTCATCGgCCTGCAGAAGCGCTCTGTTGAGACGTGCTTCACTATCCACCATTTCGAGAACAAGTTCGTGACCGAAACCAAGATCTGCAAAGCCTGA

Function

symbol description
itm2a Predicted to enable amyloid-beta binding activity. Predicted to be involved in negative regulation of amyloid precursor protein biosynthetic process. Predicted to act upstream of or within plasma cell differentiation. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and plasma membrane.

NR:

description
PREDICTED: integral membrane protein 2A

GO: NA

KEGG:

id description
K18241 ITM2A; integral membrane protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021420 True 735 mRNA 0.57 6 16842763 16850257

Neighbor

gene id symbol gene type direction distance location
AMCG00021414 NA coding downstream 109826 16720789 ~ 16732937 (-)
AMCG00021413 NA coding downstream 133323 16708394 ~ 16709440 (-)
AMCG00021409 LOC108443111 coding downstream 168587 16656644 ~ 16674176 (-)
AMCG00021410 LOC104920593,LOC104965768,LOC103366846 coding downstream 252154 16581562 ~ 16590609 (-)
AMCG00021411 vamp7 coding downstream 270269 16567139 ~ 16572494 (-)
AMCG00021422 chmp1b,LOC101476317 coding upstream 49119 16899376 ~ 16908983 (-)
AMCG00021428 NA coding upstream 144289 16994546 ~ 16995556 (-)
AMCG00021426 NA coding upstream 153112 17003369 ~ 17021275 (-)
AMCG00021427 NA coding upstream 172288 17022545 ~ 17023139 (-)
AMCG00021425 NA coding upstream 185700 17035957 ~ 17042507 (-)
G85837 NA non-coding downstream 19684 16822816 ~ 16823079 (-)
G85824 NA non-coding downstream 33443 16807806 ~ 16809320 (-)
G85802 NA non-coding downstream 85152 16691567 ~ 16757611 (-)
G85771 NA non-coding downstream 276742 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 371004 16471552 ~ 16471759 (-)
G85889 NA non-coding upstream 219587 17069844 ~ 17071130 (-)
G85904 NA non-coding upstream 236465 17086722 ~ 17087718 (-)
G85905 NA non-coding upstream 237676 17087933 ~ 17088835 (-)
G85909 NA non-coding upstream 278207 17128464 ~ 17128665 (-)
G85938 NA non-coding upstream 398710 17248967 ~ 17290861 (-)
AMCG00021412 NA other downstream 192823 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 600108 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2771438 14057918 ~ 14071325 (-)
G85115 NA other downstream 2790866 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2891719 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 435992 17286249 ~ 17303470 (-)
G85953 NA other upstream 569347 17419604 ~ 17423418 (-)
G86010 NA other upstream 696905 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 730985 17581242 ~ 17585441 (-)
G86049 NA other upstream 1075842 17926099 ~ 17926708 (-)

Expression


Co-expression Network