AMCG00021422 (chmp1b,LOC101476317)


Basic Information

Item Value
gene id AMCG00021422
gene name chmp1b,LOC101476317
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16899376 ~ 16908983 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021422
CAATGCTGCGTGACGTCAATGCTCGCAAAGACCACGCCTCGAAACGCGTGACGGTGACGTCACTGCTGGAGTCAGTGTGTAGCCGGAAGTGTTGGGAGAAGACAAATAAATCTAGGAAGAAGTATTACAAACCCAGAAGTAAACACGGACAAAACGACAATTTAAAACGTTTTAAATCACATCTGCCTGCGTTTCTTGCCAGCCGGAGCCACAGGAGATCTGCAACGATGTCGAGCATGGACAAGCAACTGTTCAACCTCAAGTTTGCTGCCAAAGAGCTGCTAAGAAGCTCCAAGAAATGCGACAAGGAGGAAAAGGCAGAGAAGGTCAAAGTGAAGAAGGCCATACAGAAGGGCAATATGGAGGTGGCACGGATACATGCGGAGAACGCCATCCGACAGAAGAACCAATCCATCAACTTCCTGCGCATGAGTGCACGGGTGGATGCCGTGGCGGCCAGGGTCCAGACCGCGGTCACCATGAACAAGGTCACCAAGTCGATGGCAGGAGTGGTGAAGTCGATGGACTCTGTTCTGAGGAGTATGAACCTGGAGAAGATCTCAGCCCTAATGGACAAATTTGAGCACCAGTTCGAGACACTAGACGTTCAGACAGCACAGATGGAGGACACGATGAGCAGCACGACCACTCTGACCACTCCACAGGTGAGCCACTCTGACCGCAACACAGAGCCAGGACTGGATTTGAACATGGAGCTTCCCCAGGGCCAGATGGGGTCTGTGGGCACCAGCGTGGCCTCTGCAGAGCAGGATGAGCTTTCCCAGAGGCTGGCCAAGCTCAGAGACCAGGTCTAGGCCTTCAgaagcagtgctgtgctgtgggtGGACGCTGCAACTACCCCGTGACCATACTGGTGTAAATGAGATGAACACTTATTTAACTCGACTGCCCTCTCTGCCCGGCTCATAGCGGCACCTCTCTCAGACCTGCAGAGATTCTTTCCTGATTACTGActctgtgggggtggggggtggagacAAACCCTATCAAAATCACACCCAACAAAactttgttcgtttttttttcgtgttctttttttcattgtttattaggTACTGGactgtgaaaaaatatgcttttgagAAACAACTaccaagaaaaaacacacacacacacacacttgtgaaactaacacaaacaaaaaaacacaatcttcTCATTCACATTGAAAAGGTTGTAGAAAATTAACTAGAGTCTAGTTGGTAATCAATCTGAAGATGTATTcatggtttaaaaaagaaaagaaaaaggaggtTGTGATTTTATCTACCAGctagtttgtttttacttttctaCACATGTGATGATTGACTAGTCCTATGGAAGAACTGTAAAGCTGACATATATTTCCTACGCTCTCATAATGGATCTTTTGATGTAAGAAGTCTCAGTATGCACACCAGCatggatgggatgggatgggatgggatgggatgctGTAAGAGGTGACCTGTTATTGCTGCTACACTGCAAACGTGACATATAATAATAGAGCTTTCAATTCGGCTGTGTTGCCCGTGGGGCTGCGCACAGCTGGCCAAGTGCTGCCACCGTTTGGTGGGCTTGACTTGGGTAGGGTTTCCTTGGCTTATCGCACAACAGCTGCTCCTCTAACTTATAGGGTGCCTGTgagccctgtgtgtgttgttggtgAGGGCTGCATTAATTCCTTCCCATGATGCACTAAAGCAGGGGTAGGCATCCCTGGTTATGAGTTCTGGTTCTTTAATTTAGTGATTAACATAATTGGTCCGAATCTGTTCCAGGTGTTTTACTAATTGATGATGCCGTGCCTGCAGGACTGattctctccaggaccaggcatCCCTACCCCTGGTGTAGCCCCTGCTCTTTCTGCACTGAACGGTGTGGAGGTCAGCAGGCATCTCAGAAGTGTATTTTTTGGATGAAGCGCGTTAGCTGCCTACATTCCTCCTGTATGAGGAGGCTGAGCTGAGTTGATTCCACAATGGGAAGGTATAAAACAGAAATCATAATTGGCGattctatataaatacataggTAATTTGAAGGCACCACAGCCACGTGAGCACAGTGGTGAGAAGGTGGTTGACTAACTAAATTACAAAGAGGTTCAGTCCTCTTGAATGAAAATATTCACTGCACACTCCATCCCACCACAGGTATTGCTGCCAGGTATAATGTAGTTCTACTGTAATGTCATTACCTTACATTTGTTCCTGGTGTTTTCTTCTACACTTACccatatacagtatacacatgtaaatgtgtaaacactgacttctttttttgtattttattgtttcagtgTTGAACTTCAGCAGctgattttctttcaatatttatattccttctgtttgcttttgctatgaaatagaaaaaaaaaagaaaaggcaaacaaaaagaGAAGTGGTTTGGTTGTTGATTTTTAGCCTTGTTTCCTTTTCTATCATGGTTTCACATTGTTTGGGGAATGTCTGTCTTTGGATGACTTAGGACAGTTTTGACAAgttaataaaattatttttaaacatgga

Function

symbol description
chmp1b Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in cytosol and late endosome membrane. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP1B (charged multivesicular body protein 1B).

NR:

description
charged multivesicular body protein 1b

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021422 True 2540 mRNA 0.45 8 16899376 16908983

Neighbor

gene id symbol gene type direction distance location
AMCG00021420 itm2a coding downstream 49119 16842763 ~ 16850257 (-)
AMCG00021414 NA coding downstream 166439 16720789 ~ 16732937 (-)
AMCG00021413 NA coding downstream 189936 16708394 ~ 16709440 (-)
AMCG00021409 LOC108443111 coding downstream 225200 16656644 ~ 16674176 (-)
AMCG00021410 LOC104920593,LOC104965768,LOC103366846 coding downstream 308767 16581562 ~ 16590609 (-)
AMCG00021428 NA coding upstream 85563 16994546 ~ 16995556 (-)
AMCG00021426 NA coding upstream 94386 17003369 ~ 17021275 (-)
AMCG00021427 NA coding upstream 113562 17022545 ~ 17023139 (-)
AMCG00021425 NA coding upstream 126974 17035957 ~ 17042507 (-)
AMCG00021432 rps6ka6,rps6kal,LOC103359561,LOC102207076 coding upstream 340649 17249632 ~ 17280801 (-)
G85837 NA non-coding downstream 76297 16822816 ~ 16823079 (-)
G85824 NA non-coding downstream 90056 16807806 ~ 16809320 (-)
G85802 NA non-coding downstream 141765 16691567 ~ 16757611 (-)
G85771 NA non-coding downstream 333355 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 427617 16471552 ~ 16471759 (-)
G85889 NA non-coding upstream 160861 17069844 ~ 17071130 (-)
G85904 NA non-coding upstream 177739 17086722 ~ 17087718 (-)
G85905 NA non-coding upstream 178950 17087933 ~ 17088835 (-)
G85909 NA non-coding upstream 219481 17128464 ~ 17128665 (-)
G85938 NA non-coding upstream 339984 17248967 ~ 17290861 (-)
AMCG00021412 NA other downstream 249436 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 656721 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2828051 14057918 ~ 14071325 (-)
G85115 NA other downstream 2847479 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2948332 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 377266 17286249 ~ 17303470 (-)
G85953 NA other upstream 510621 17419604 ~ 17423418 (-)
G86010 NA other upstream 638179 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 672259 17581242 ~ 17585441 (-)
G86049 NA other upstream 1017116 17926099 ~ 17926708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030036 chmp1b coding NC_007116.7 CM002889.2 23024033 ~ 23028214 (+)