AMCG00021441


Basic Information

Item Value
gene id AMCG00021441
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17470325 ~ 17473396 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021441
GGTGACAGGAAGGCGCTGCTGTTTGGCAGTCAGAAGCTCAACCTGCACCAGGCAGGGCAGGAGTGGGACCCCAAGGCCCTGTGCCCCACACCTGGCTCTGTCGACCTTTGCCTTGTGTCCGACACCCCACTGGCCACAGTTGAGCAGCACCTCCAGGCCTGTGGGGTGGCAGTGGAGGAGGGTCCGGTGGCCAGGACGGGCGCAGTGGGGCCCATCACCTCTCTGTACTTCCGGGACCCAGACGGTAACCTGATCGAGGTGTCAAACTACCCCAGCCCACCTGAAAGGAAGGATGGGGCATAA
>TU107316
CTTGACTTCTCTATCCCTCTGTCTGTGGTGCTGCTGTGCAGGGTGACAGGAAGGCGCTGCTGTTTGGCAGTCAGAAGCTCAACCTGCACCAGGCAGGGCAGGAGTGGGACCCCAAGGCCCTGTGCCCCACACCTGGCTCTGTCGACCTTTGCCTTGTGTCCGACACCCCACTGGCCACAGTTGAGCAGCACCTCCAGGCCTGTGGGGTGGCAGTGGAGGAGGGTCCGGTGGCCAGGACGGGCGCAGTGGGGCCCATCACCTCTCTGTACTTCCGGGACCCAGACGGTAACCTGATCGAGGTGTCAAACTACCCCAGCCCACCTGAAAGGAAGGATGGGGCATAAGGCCTCTGGATCCCCCAAATCTATAAATGCTATAGTGAATTTCAATACCAGCTGTACCTATTCATTCTACACTTAGCATTAACCTCTTACTTAATTCCCAAGTCCACCGCTAGATTGCACCCCGGTCCCAGTTTTCATTCTGTTCTCCTTGTCTTTTCCTCATTATTGAATCATTACCTTCACCTGTCTCATGTTTCTCTGCCCATCAACTCAGTGTATTTAAACCCCATCCAGCCATACCTTTATTGTGAAGTTTTCTCTGCCTCTTGCAACATCACTGAGCCTGCTTACCTTTGAATATTCTGACCACTAGTGTTTCCTGACCATTGCCTGTTCTTCGATACAACGTTTTCTGGATTCCCTTTGATGTTCTGTCTGCTCAATCAACCAACCCTACGTTTGATGTATTGATCGCTCTGCCTTGTTTTGCCTGCATTGATCTGTTCACCAGTATTTGACCTACACCTGTTATTGACCTGCCATTTCCCCGGCAGATCCTGCAACATGATTATTACAGTTTAgctatatatttctaaaatgttatcAATCATTCATGCTATAATACTTCAATAAATTAGCTTTTATAGTTCCTCATTGATGGTGCCCTTGATGTCTTTATGCACTTGACCTGCATGTCAAGAGACTGTCCTGGAGCAAGGTAGAATGTCACTAATAGAAACTCTACAACACTTGGGCCCAATGTCAATTAAATCCTTCTCCAAGCTTCGGAACCCTTCCCCTTCCACAACATTAAACTGCCAAAGACATCAGGCACACATTTTGAGAACTGAGTTGGCTATGGCCCATTATTTGGTTTGCTGGGGAGCACCTTTCTTGTCCAAACTCCACAGAATGAGGCGGTACAGTATTTTTTGCCTGTTATGGCAACTTGTCCctatatcaatttaaaatttaagcacagttttgcaACTACGGCTTTGCATCCACAAATATCCACTTAAATGACTCAAAAACACTACTTTTCCCCTGTATTGCTTTATATGTCACCCTGTCACTTTTAAGAAACACAAGCTTTTGTAACGTATCTTTACCTCCACCATTCTTTAGAGTAGCACACACATAACCTTCACTTTGACAGTTTTTAaataagccccattcacactgaaatgccagcaaaatgcatGGACGTTCCTAttgcacccccattcacactaGCTTTGAATGCCAGCAAATTGCAAGCatgtacccattcacacagaaaatggAATACAGGCATTAGCCTTGGGAATGAGACGCTACAGAAGCCCATGGATTTGGGTGAGGAGACAAAAGACCATtattctggacgtgtttgtaaaCGTTCAATAATTTCCCTGTTCTGCTAGATTCctttcattgtgtttactgggctttTGGATCTGACCAGGGTGCCGGTTTGGTTCGGACTTACTACcaaaaacagagaaaagcaAACGATACATCAATCTAGGATGTGTTTTCATGCTATGACCAGGTCATCaggctgtatggttgtgtgtttttgctttggtcactggacccagtgGTCGCAGCTCATTTGAATAAGTGAACTCAGTAGGAGACTCAGCTCTTGGTTCATGGTCGTGTAACGAAAagcattgtgtggggtcttgacatatactacagcaaagttaaatcaactacaataaattagaaaagaag

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021441 False 303 mRNA 0.63 2 17470366 17471734
TU107316 True 2006 lncRNA 0.45 2 17470325 17473396

Neighbor

gene id symbol gene type direction distance location
AMCG00021442 NA coding upstream 33727 17430466 ~ 17436598 (+)
AMCG00021443 NA coding upstream 42122 17427517 ~ 17428203 (+)
AMCG00021436 NA coding upstream 50503 17404018 ~ 17419822 (+)
AMCG00021438 LOC108430901,LOC105026965,LOC106603324 coding upstream 70689 17371482 ~ 17399636 (+)
AMCG00021434 NA coding upstream 105507 17339416 ~ 17364818 (+)
AMCG00021439 NA coding downstream 9695 17483091 ~ 17492659 (+)
AMCG00021440 znf711,LOC107569605,LOC107684921,LOC107746145 coding downstream 21397 17494793 ~ 17507130 (+)
AMCG00021451 NA coding downstream 559795 18033191 ~ 18050404 (+)
AMCG00021450 NA coding downstream 588225 18061621 ~ 18067774 (+)
AMCG00021453 NA coding downstream 635682 18109078 ~ 18112221 (+)
G85976 NA non-coding upstream 10384 17459493 ~ 17459941 (+)
G85941 NA non-coding upstream 171512 17298159 ~ 17298813 (+)
G85903 NA non-coding upstream 382531 17086752 ~ 17087794 (+)
G85876 NA non-coding upstream 427750 17036572 ~ 17042575 (+)
G85823 NA non-coding upstream 661011 16807806 ~ 16809314 (+)
G85992 NA non-coding downstream 34130 17507526 ~ 17509083 (+)
G85993 NA non-coding downstream 35689 17509085 ~ 17509295 (+)
G85999 NA non-coding downstream 39732 17513128 ~ 17513621 (+)
G86006 NA non-coding downstream 53330 17526726 ~ 17527126 (+)
G86007 NA non-coding downstream 59223 17532619 ~ 17532820 (+)
G85869 NA other upstream 466194 16997877 ~ 17004131 (+)
G85787 NA other upstream 756287 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 877352 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 1396704 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 2037961 15428477 ~ 15432364 (+)
G86121 NA other downstream 775094 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 1573653 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 1806369 19279765 ~ 19294779 (+)
G86407 NA other downstream 2026404 19499800 ~ 19501242 (+)
G86601 NA other downstream 2869214 20342610 ~ 20401249 (+)

Expression


Co-expression Network