AMCG00021460 (rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887)


Basic Information

Item Value
gene id AMCG00021460
gene name rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18241237 ~ 18248894 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021460
ATGCAGATGGAGACCCTGGGTGGCCAGTTGACCCATCAAATCTGGAGCACTCTCACCTTCTGGCCTGTGGGGCTCCTGTATGAGCTAGGTCTGAGCAAGCAAGGGGGTGCAGTGCACTCTCACCTCCCTGCAGGAACCCAGCAGCGCAGTCTGTCCAACACAGTGTATTGCCAACACTGTCTCAACagctgtctgtccgtctgtctgtccatccatcTGCCTGCTTGTCCTCCTGGGAACGGAGGCAGCGGCTGTGTGCAGCAGCTGTGTCTGCTGGGAGAGAGTTGGTGTTATGAGGGACTGCTGACCATCAagtgtgtggtggtgggggacGGAGCAGTGGGCAAGACCTGCCTGCTGATCTCCTACACCACCAACGCCTTCCCGGAGGAGTACATCCCCACAGTTTTTGACAACTACAGTGCGCAGATGAGCGTCGATGGGCGCACTGTGAGCCTCAACCTGTGGGACACAGCCGGGCAGGAAGAGTATGACCGGCTGCGCACACTGTCCTACCCGCAGACCAATGTCTTCATCATCTGCTTCTCCATTGGCAGCCCCTCCTCACATGCCAATGTCCGGCACAAGTGGCAGCCCGAGGTGTCGCACCACTGCCCCAGCGTGCCTGTCCTGTTGGTGGGCACCAAGTGCGACCTGCGGGCCGACCTGGAGACGGTGAAGAAGCTGAAGGAGCAGGGCCTGGCCCCCACCACCTTCCAGCAGGGCAGTGCACTGGCCAAGCAGATTGGCGCAGTCAAGTACCTGGAGTGCTCAGCGCTGCAGCAGGAGGGGGTGCGCGATGTGTTTGCAGAGGCCGTGCGCGCAGTGCTGAACCCCGTCGCCAAGAAGAACCCCAAGAAGTGCGTATTGTTATAG
>TU107532
CCAGACAGTGTCTGCCCTCAGAAACGTCAGTCCCCAGTGCACAGAGGCAGTGATGCAGATGGAGACCCTGGGTGGCCAGTTGACCCATCAAATCTGGAGCACTCTCACCTTCTGGCCTGTGGGGCTCCTGTATGAGCTAGGTCTGAGCAAGCAAGGGGGTGCAGTGCACTCTCACCTCCCTGCAGGAACCCAGCAGCGCAGTCTGTCCAACACAGTGTATTGCCAACACTGTCTCAACagctgtctgtccgtctgtctgtccatccatcTGCCTGCTTGTCCTCCTGGGAACGGAGGCAGCGGCTGTGTGCAGCAGCTGTGTCTGCTGGGAGAGAGTTGGTGTTATGAGGGACTGCTGGTAGGGGGGTGGCTGGGCTGATGTTAGAGCTTCTACAAGGAATCCAGAGAGTCAGCAGCTTCAGCATTATGTCCCCcctacaccccccacccctcattACCCCCCAGTCATGTCTCGCTACTGTGTGCCAGCCAGTGTGATTAGCTTTACAGCACCTACACTTACTACCTCCAGCCATTTACTAACTCTGCATCCTCAAACCACCCTCACCTCCCCCTGTTTTCTCAAACATGCACCTTAGCCCCCCTGCAATACTGGTTCCCTCTTCCGGGGTTGTGAGGTTTGGGTGAAGGACAACCACAACCTACTGGCAGGAAGTGGGATTGAGATCCTAATAgtgctactccacactgccccCTACAGTATGCGCTGAAGGAGTTCCAGACTCCCAGGCTGTGTGCTACTGCTCTGTTAGTCCTGCATGTTGTCAGACAGTGAGGCACAGTTGTGGTAGTGCTGTCCACTCCAACCCCTCCTCTGTGTCTTTGTGCACAGAAACAAGAGCAAAGAGGGCTGCCTCCCCACTGAAAAcgcacgcacatacacacacacaacctgtccccctcctcccttctcATGTTGCAGCTGCTAAGTGCTGATTGGTTGCTGTGTGAGTGGCAGTACAGGGCTCTGACAGACACCTTTGCACTGGGGTTCACATAAAGTATGGAGCGATCATTCGAACTCTAAAGCGACAGACCCATCATCTTTGCTGTGTGGAGAGCTGTGCTATTTCATCATGAACTGGAGGacaagagaaagagagcaacattatatgtgtatgtgattggagtaaagacacacaaacacaaagtaatGTTTCCAATCTGTAGAAATGGACACTGCATTGGGGACTGTCCACAAGGGCTGTAGGAA

Function

symbol description
rhog Enables GTPase activity. Involved in activation of GTPase activity; cell chemotaxis; and positive regulation of protein localization to plasma membrane. Acts upstream of or within Ras protein signal transduction; actin cytoskeleton organization; and positive regulation of transcription, DNA-templated. Located in extracellular exosome and focal adhesion.

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021460 False 876 mRNA 0.60 2 18241237 18248842
TU107532 True 1234 TUCP 0.53 1 18247661 18248894

Neighbor

gene id symbol gene type direction distance location
AMCG00021461 NA coding downstream 658 18232571 ~ 18240579 (-)
AMCG00021459 ogt.1,ogt coding downstream 15022 18196137 ~ 18226215 (-)
AMCG00021456 NA coding downstream 75570 18153005 ~ 18165667 (-)
AMCG00021457 NA coding downstream 92687 18109618 ~ 18148550 (-)
AMCG00021458 NA coding downstream 132068 18097892 ~ 18109169 (-)
AMCG00021462 NA coding upstream 124 18249018 ~ 18279785 (-)
AMCG00021464 LOC101062031,LOC105905861,LOC108413288,LOC106612212 coding upstream 228178 18477072 ~ 18477944 (-)
AMCG00021468 NA coding upstream 317210 18566104 ~ 18575434 (-)
AMCG00021469 NA coding upstream 346248 18595142 ~ 18608153 (-)
AMCG00021467 LOC107748936,LOC107689138,LOC107733406,LOC107663109 coding upstream 414329 18663223 ~ 18684421 (-)
G86029 NA non-coding downstream 607251 17633755 ~ 17633986 (-)
G86013 NA non-coding downstream 708408 17532608 ~ 17532829 (-)
G86012 NA non-coding downstream 714098 17526753 ~ 17527139 (-)
G86000 NA non-coding downstream 727617 17513197 ~ 17513620 (-)
G85985 NA non-coding downstream 764333 17476704 ~ 17476904 (-)
G86154 NA non-coding upstream 74597 18323491 ~ 18324025 (-)
G86203 NA non-coding upstream 300550 18549444 ~ 18549757 (-)
G86222 NA non-coding upstream 343746 18592640 ~ 18631467 (-)
G86225 NA non-coding upstream 373669 18622563 ~ 18623590 (-)
G86240 NA non-coding upstream 410404 18659298 ~ 18663129 (-)
G86049 NA other downstream 314529 17926099 ~ 17926708 (-)
AMCG00021444 NA other downstream 655796 17581242 ~ 17585441 (-)
G86010 NA other downstream 688471 17547162 ~ 17552766 (-)
G85953 NA other downstream 817819 17419604 ~ 17423418 (-)
AMCG00021435 hdx,LOC107572093 other downstream 937767 17286249 ~ 17303470 (-)
G86241 NA other upstream 572639 18821533 ~ 18909908 (-)
AMCG00021483 NA other upstream 1010540 19259434 ~ 19274440 (-)
G86327 NA other upstream 1026460 19275354 ~ 19278023 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 1197192 19446086 ~ 19468782 (-)
AMCG00021514 NA other upstream 2032258 20281152 ~ 20284979 (-)

Expression


Co-expression Network