AMCG00021471 (LOC106604239)


Basic Information

Item Value
gene id AMCG00021471
gene name LOC106604239
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18762928 ~ 18772587 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021471
ATGCTGAACATAAAGAAGGGGAAAACACTCAAAGAGAATCAGCACTCCAGCTGCTGCACTGCCCAGCCCTGTGTGGCACTGCCCCTGGACACGGACAGCATTCTAGACACCACAGTAGCAGCAGTGTCTCTGTTCCTGCCCACTCGGGAGCAGCAGCCCCTCCCACATCCAAGCTGCCCCATGCTGGCCCCACACTACCCATGCATTACCCCCACATCTCCAATTAGCAGGTATCTGGGGTTCCTCAGCACGGGTGACCAAGCAGCCAAGGGGAATTACGGGCTGCTGGACCAGATCCAGGCACTGCGGTGGATCAGCGAGAATATCGGCTACTTCGGGGGAGACTCCAACAGGATCACTGTGTTCGGCTCGGGCATTGGTGCATCCTGCGTCAGCCTGCTCACGCTTTCCCACCATTCTGAAGGCACCCTCTTCTCACACATTGATTAG

Function

NR:

description
PREDICTED: neuroligin 4-like, partial

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021471 True 450 mRNA 0.57 4 18762928 18772587

Neighbor

gene id symbol gene type direction distance location
AMCG00021467 LOC107748936,LOC107689138,LOC107733406,LOC107663109 coding downstream 78507 18663223 ~ 18684421 (-)
AMCG00021469 NA coding downstream 154775 18595142 ~ 18608153 (-)
AMCG00021468 NA coding downstream 187494 18566104 ~ 18575434 (-)
AMCG00021464 LOC101062031,LOC105905861,LOC108413288,LOC106612212 coding downstream 284984 18477072 ~ 18477944 (-)
AMCG00021462 NA coding downstream 483143 18249018 ~ 18279785 (-)
AMCG00021470 nlgn3 coding upstream 25331 18797918 ~ 18809251 (-)
AMCG00021474 NA coding upstream 220137 18992724 ~ 19026083 (-)
AMCG00021476 LOC107584322 coding upstream 286297 19058884 ~ 19073801 (-)
AMCG00021477 necab1,LOC107724363,LOC107702129 coding upstream 303394 19075981 ~ 19100225 (-)
AMCG00021482 NA coding upstream 451844 19224431 ~ 19231673 (-)
G86240 NA non-coding downstream 99799 18659298 ~ 18663129 (-)
G86222 NA non-coding downstream 131461 18592640 ~ 18631467 (-)
G86225 NA non-coding downstream 139338 18622563 ~ 18623590 (-)
G86203 NA non-coding downstream 213171 18549444 ~ 18549757 (-)
G86154 NA non-coding downstream 438903 18323491 ~ 18324025 (-)
G86249 NA non-coding upstream 145667 18918254 ~ 18918531 (-)
G86253 NA non-coding upstream 233029 19005616 ~ 19006432 (-)
G86285 NA non-coding upstream 380418 19153005 ~ 19153285 (-)
G86324 NA non-coding upstream 485970 19258557 ~ 19258855 (-)
G86386 NA non-coding upstream 673830 19446417 ~ 19448494 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 514034 18241237 ~ 18248894 (-)
G86049 NA other downstream 836220 17926099 ~ 17926708 (-)
AMCG00021444 NA other downstream 1177487 17581242 ~ 17585441 (-)
G86010 NA other downstream 1210162 17547162 ~ 17552766 (-)
G85953 NA other downstream 1339510 17419604 ~ 17423418 (-)
G86241 NA other upstream 48946 18821533 ~ 18909908 (-)
AMCG00021483 NA other upstream 486847 19259434 ~ 19274440 (-)
G86327 NA other upstream 502767 19275354 ~ 19278023 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 673499 19446086 ~ 19468782 (-)
AMCG00021514 NA other upstream 1508565 20281152 ~ 20284979 (-)

Expression


Co-expression Network