AMCG00021472


Basic Information

Item Value
gene id AMCG00021472
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19047049 ~ 19055103 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021472
CTTTATGAAGACAAACGCGTCGGAGTGCATGGCCCGCCGTCACTCGCTCTCTGCCTCGgacGATGGAAGTGTCCAGAAGGAGGATTTATAAACTCCTGCAGCCGGCCAGGCCACTGCGACGCCTGAACATTGACCCTGaatcGGCTCCTAGGAATGCGGAAACGAGAGACTCTAAGGATTGCTCATACGCTGAGGACAGACCGgtTCATGGAGTTGCAGTGGATGAGTTCTGCAGAATTATCAATCTGCAGACTCACAGTCAGCCCACTGTGAAGAAAGAAAGAATATCCTACAGCAGAGAGTTTCTGATCAAACTTGCCAGCTCACCTGTTGCCAAAAGGAAACCAGATTTTTTACCTGATCACCCAGTGGTTCTTGAGAAGCCGAAGTTGGCCTGCGCTGGTAAAGACTCTCTATCATGCAAGCCAGGCGGCAGTGTGGAGCAGCAGGGGTTTCATGCAGAATGGATCTACTGTTCATGACGGCCTGTGTGGCGTCTGTTTTTCTGGTGCGTTCTTCTATGGGAGAAAACTCTGGTGACAGGCGTTACTGCCGCTTCAGTGGAAGACTGGGGAACAGGGTCCTTGCCGGTTGCCAGACTGAAGGTGCCCTGAGCTGCTGAAGGCATCGCACACTGAGGAGTATCTGGTGATCATGGTTCTCGAAACGAGGCTGAAACAAATGGCATTTCATTTATTAGACATTGGATCAATAACTGTTATTGATGACAAGGTCCTAGTGCTCATAGCTAATTCCATAAAAGATCATTTTCcctgtcttttctcttttaatttgaGCAGCGTTGACCAGAAACACGGTTTGTGAGCGCACGGTCATGTGAGCGCACTGGGTACACTACGTATCTGAAACCTTTCAGCCAGGAGGGCTTTGGGATTCCCCTGTAGTTCCCTGTTGGCGAGAGCAGACTGGTGTTATTGAAACTAAAGAGAGCATTCTCACCGCTGTGAACGTCAGGGTTCAGTCAAAATTGCTTTGACATGTTGGAGAAGTGGATCATGTTCAGTATAGATAGACTGATACAAGAAACTAGTTCTGAACTGTGTTTCCCACAGTGCCACGCTCTTCCTTGCAgtagtttatttgatttcattgtCTGCATGCTTAAACCtaaattgattttttatttttttggcttgTTCACCATTGTTTCACAGACGAGCTGTTAGCATCTGTGCTTAAGAGAAAAACCTTTATCGTTGACTTCATtccttaatgtttaatttaaaaggcagaaaaaaacTTAAAGGACTAAATGTACTTATTCTCCCTTAGAATTGATAATTTtctatgttttgtattgtaattataagTGTCTTTCAATGTATATAGTTGTTGAAATCACTGGTGCTGGTTATTTGAATTCCTGTGTCACTGAAGGATCTCTGACACTCATTCACGGGCTCGTGTTGCTCCTCGTGTTTGGATCGTAGCTGGTAACACGGCTTGTGTTCACTTCATCACTGTGCGCTGGACTATAGGCATCGAGTCCGAGGCTGCTTGAAATAGGTCATTAATGTGGATCTGGGAAATTTGGTACAGGGAACAAGTGTGTGAAAAAACTACcataaaatacctttaaaaaaattcaaaatttTACAAGAGATTATTAGAGTTTGCACATTGTTCCCTTTCGTGAAATGTAAAAAGCTATAGTTTATACAAACCtgaacaaattcaaaatgtgttattaatttattaccaACAATATGGCATCGTGTTTAAATGATGCAGGTAATTTTTGCAGTGCAGAGAAATTAGCCTCTTGCAGCGAACTGGTCTGGGTTGCGTTGGGGCTGAAGGTGGTTGTCCACTCGAGGAGTGAGGGACGAAAATATAATTTCCCCCATAATtaatacaaaggaaaaaaatacttgaaaaataatggttattttgtttgtgttactcTAAAACCATTTCAAGTAGTTTGTTTAAGGAATGAACAGTCAGTACTTGCTAGTGTTTgagttcattttgtttttctttgcacagTGTTGAACTTGTTTCAGACTTTTTAATTCCTTTCTCCCTCTGGACAGTCCAGTAGGTTGCATGTGAAGCTTTAACGTTATGCAGTTGGTTTtactaaaacatttacaaaggtTTTGTTCTTGCATTTTGTCCTTGTTTATGGTTTTTGGGGAACAAAGCTGAGCCTCAGCCCAGCGCTCCACTGGTGAAGTGTAACGAGATTAACACGTGTCTAAAGTGTGGCTTTGCAgactgagctgagctgagctgtggCTGTTATGTGATGGCAATCTGGTTACAGTCAACTAGTTTTGAATGCCTTACTTATGGAGATGTACCAATGTAGGGTAGATAACGGCACTTGTCCTGCACAGAATTTACATGGTTTTACCTGTGAATAAAACGGTTGTGCCTGCC
>TU107691
GTGGCCGCTGACCGCGAGAGGAGGCTGTTTCGGCCGGCAGGCACAGAGGCGCGCGCTGCAGaatcGGCTCCTAGGAATGCGGAAACGAGAGACTCTAAGGATTGCTCATACGCTGAGGACAGACCGgtTCATGGAGTTGCAGTGGATGAGTTCTGCAGAATTATCAATCTGCAGACTCACAGTCAGCCCACTGTGAAGAAAGAAAGAATATCCTACAGCAGAGAGTTTCTGATCAAACTTGCCAGCTCACCTGTTGCCAAAAGGAAACCAGATTTTTTACCTGATCACCCAGTGGTTCTTGAGAAGCCGAGGAAGGATTTATACTGTGATTACTCCTTTACCCATTACAGAGACTAAGATGTCAGGGAACTACAGAAGTTGGCCTGCGCTGGTAAAGACTCTCTATCATGCAAGCCAGGCGGCAGTGTGGAGCAGCAGGGGTTTCATGCAGAATGGATCTACTGTTCATGACGGCCTGTGTGGCGTCTGTTTTTCTGGTGCGTTCTTCTATGGGAGAAAACTCTGGTGACAGGCGTTACTGCCGCTTCAGTGGAAGACTGGGGAACAGGGTCCTTGCCGGTTGCCAGACTGAAGGTGCCCTGAGCTGCTGAAGGCATCGCACACTGAGGAGTATCTGGTGATCATGGTTCTCGAAACGAGGCTGAAACAAATGGCATTTCATTTATTAGACATTGGATCAATAACTGTTATTGATGACAAGGTCCTAGTGCTCATAGCTAATTCCATAAAAGATCATTTTCcctgtcttttctcttttaatttgaGCAGCGTTGACCAGAAACACGGTTTGTGAGCGCACGGTCATGTGAGCGCACTGGGTACACTACGTATCTGAAACCTTTCAGCCAGGAGGGCTTTGGGATTCCCCTGTAGTTCCCTGTTGGCGAGAGCAGACTGGTGTTATTGAAACTAAAGAGAGCATTCTCACCGCTGTGAACGTCAGGGTTCAGTCAAAATTGCTTTGACATGTTGGAGAAGTGGATCATGTTCAGTATAGATAGACTGATACAAGAAACTAGTTCTGAACTGTGTTTCCCACAGTGCCACGCTCTTCCTTGCAgtagtttatttgatttcattgtCTGCATGCTTAAACCtaaattgattttttatttttttggcttgTTCACCATTGTTTCACAGACGAGCTGTTAGCATCTGTGCTTAAGAGAAAAACCTTTATCGTTGACTTCATtccttaatgtttaatttaaaaggcagaaaaaaacTTAAAGGACTAAATGTACTTATTCTCCCTTAGAATTGATAATTTtctatgttttgtattgtaattataagTGTCTTTCAATGTATATAGTTGTTGAAATCACTGGTGCTGGTTATTTGAATTCCTGTGTCACTGAAGGATCTCTGACACTCATTCACGGGCTCGTGTTGCTCCTCGTGTTTGGATCGTAGCTGGTAACACGGCTTGTGTTCACTTCATCACTGTGCGCTGGACTATAGGCATCGAGTCCGAGGCTGCTTGAAATAGGTCATTAATGTGGATCTGGGAAATTTGGTACAGGGAACAAGTGTGTGAAAAAACTACcataaaatacctttaaaaaaattcaaaatttTACAAGAGATTATTAGAGTTTGCACATTGTTCCCTTTCGTGAAATGTAAAAAGCTATAGTTTATACAAACCtgaacaaattcaaaatgtgttattaatttattaccaACAATATGGCATCGTGTTTAAATGATGCAGGTAATTTTTGCAGTGCAGAGAAATTAGCCTCTTGCAGCGAACTGGTCTGGGTTGCGTTGGGGCTGAAGGTGGTTGTCCACTCGAGGAGTGAGGGACGAAAATATAATTTCCCCCATAATtaatacaaaggaaaaaaatacttgaaaaataatggttattttgtttgtgttactcTAAAACCATTTCAAGTAGTTTGTTTAAGGAATGAACAGTCAGTACTTGCTAGTGTTTgagttcattttgtttttctttgcacagTGTTGAACTTGTTTCAGACTTTTTAATTCCTTTCTCCCTCTGGACAGTCCAGTAGGTTGCATGTGAAGCTTTAACGTTATGCAGTTGGTTTtactaaaacatttacaaaggtTTTGTTCTTGCATTTTGTCCTTGTTTATGGTTTTTGGGGAACAAAGCTGAGCCTCAGCCCAGCGCTCCACTGGTGAAGTGTAACGAGATTAACACGTGTCTAAAGTGTGGCTTTGCAgactgagctgagctgagctgtggCTGTTATGTGATGGCAATCTGGTTACAGTCAACTAGTTTTGAATGCCTTACTTATGGAGATGTACCAATGTAGGGTAGATAACGGCACTTGTCCTGCACAGAATTTACATGGTTTTACCTGTGAATAAAACGGTTGTGCCTGCCTGTC

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0042579 microbody cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021472 True 2406 mRNA 0.43 6 19047171 19055099
TU107691 False 2399 lncRNA 0.42 6 19047049 19055103

Neighbor

gene id symbol gene type direction distance location
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding upstream 1199 19031291 ~ 19045850 (+)
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding upstream 490649 18555792 ~ 18556400 (+)
AMCG00021465 NA coding upstream 506901 18488903 ~ 18540148 (+)
AMCG00021463 taf1 coding upstream 659526 18338056 ~ 18387523 (+)
AMCG00021455 NA coding upstream 858887 18177180 ~ 18188162 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding downstream 52674 19107777 ~ 19119568 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding downstream 109575 19164678 ~ 19180521 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding downstream 147775 19202878 ~ 19220274 (+)
AMCG00021479 NA coding downstream 177025 19232128 ~ 19247678 (+)
AMCG00021484 NA coding downstream 244433 19299536 ~ 19307124 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 367173 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 382516 18663193 ~ 18664533 (+)
G86217 NA non-coding upstream 428493 18615170 ~ 18618556 (+)
G86202 NA non-coding upstream 497290 18549428 ~ 18549759 (+)
G86118 NA non-coding upstream 817383 18229465 ~ 18229666 (+)
G86284 NA non-coding downstream 97912 19153015 ~ 19153282 (+)
G86309 NA non-coding downstream 169350 19224453 ~ 19226768 (+)
G86323 NA non-coding downstream 203355 19258458 ~ 19258855 (+)
G86367 NA non-coding downstream 336994 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 393626 19448729 ~ 19449107 (+)
G86121 NA other upstream 797363 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1573653 17470325 ~ 17473396 (+)
G85869 NA other upstream 2042918 16997877 ~ 17004131 (+)
G85787 NA other upstream 2333011 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 2454076 16590181 ~ 16592973 (+)
AMCG00021485 NA other downstream 224662 19279765 ~ 19294779 (+)
G86407 NA other downstream 444697 19499800 ~ 19501242 (+)
G86601 NA other downstream 1287507 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1313050 20368153 ~ 20371536 (+)
G86616 NA other downstream 1323320 20378423 ~ 20380424 (+)

Expression


Co-expression Network