AMCG00021477 (necab1,LOC107724363,LOC107702129)


Basic Information

Item Value
gene id AMCG00021477
gene name necab1,LOC107724363,LOC107702129
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19075981 ~ 19100225 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021477
ATGGATTGCTCTGAAGAAACGCAGTCTGTCTCTGACGAGGCGAGCTCCCCCGTGGAGCTGAAGAAAGGCATGTCCATTTTCCTGGATGTAAACGATGGGAAGCTGTCCTTCGAGGAGTTCAAAGCCTACTTCTCGGATGGAGTCCTGACTGGAGAtgagctgcaggagctgttcCACACCATCGACACCCATAACACCGACAACTTGGACACGGATGAGCTGTGCGaatatttCTCTCAGCACCTGGGAGAGTATGAGAGTGTCTTGGCTGCCCTGGAAGATCTGAACTTCTCCATCCTGAAGGCGATGGATAAAAccaaaaagAGCAACGTGCGCATGTGTACAGGCGGGGGTGCAGGCAGTGAGTCGCGGGCTGAGTGGGCTGCCGTGTCTGAGTCTGACCTGAGTCTGCAGGCCATGACAGAGCAGACCTAA

Function

symbol description
necab1 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in cytoplasm. Is expressed in nervous system. Orthologous to human NECAB1 (N-terminal EF-hand calcium binding protein 1).

NR:

description
PREDICTED: N-terminal EF-hand calcium-binding protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021477 True 435 mRNA 0.54 5 19075981 19100225

Neighbor

gene id symbol gene type direction distance location
AMCG00021476 LOC107584322 coding downstream 2180 19058884 ~ 19073801 (-)
AMCG00021474 NA coding downstream 49898 18992724 ~ 19026083 (-)
AMCG00021470 nlgn3 coding downstream 266730 18797918 ~ 18809251 (-)
AMCG00021471 LOC106604239 coding downstream 303394 18762928 ~ 18772587 (-)
AMCG00021467 LOC107748936,LOC107689138,LOC107733406,LOC107663109 coding downstream 391560 18663223 ~ 18684421 (-)
AMCG00021482 NA coding upstream 124206 19224431 ~ 19231673 (-)
AMCG00021481 NA coding upstream 148669 19248894 ~ 19252262 (-)
AMCG00021489 NA coding upstream 196258 19296483 ~ 19296899 (-)
AMCG00021487 adam22,LOC107719137,LOC107714333 coding upstream 207132 19307357 ~ 19339518 (-)
AMCG00021490 NA coding upstream 244741 19344966 ~ 19354391 (-)
G86253 NA non-coding downstream 69549 19005616 ~ 19006432 (-)
G86249 NA non-coding downstream 157450 18918254 ~ 18918531 (-)
G86244 NA non-coding downstream 264834 18750672 ~ 18811147 (-)
G86240 NA non-coding downstream 412852 18659298 ~ 18663129 (-)
G86225 NA non-coding downstream 452391 18622563 ~ 18623590 (-)
G86285 NA non-coding upstream 52780 19153005 ~ 19153285 (-)
G86324 NA non-coding upstream 158332 19258557 ~ 19258855 (-)
G86386 NA non-coding upstream 346192 19446417 ~ 19448494 (-)
G86474 NA non-coding upstream 800233 19900458 ~ 19900836 (-)
G86472 NA non-coding upstream 803771 19903996 ~ 19912403 (-)
G86241 NA other downstream 166073 18821533 ~ 18909908 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 827087 18241237 ~ 18248894 (-)
G86049 NA other downstream 1149273 17926099 ~ 17926708 (-)
AMCG00021444 NA other downstream 1490540 17581242 ~ 17585441 (-)
G86010 NA other downstream 1523215 17547162 ~ 17552766 (-)
AMCG00021483 NA other upstream 159209 19259434 ~ 19274440 (-)
G86327 NA other upstream 175129 19275354 ~ 19278023 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 345861 19446086 ~ 19468782 (-)
AMCG00021514 NA other upstream 1180927 20281152 ~ 20284979 (-)
G86600 NA other upstream 1229197 20329422 ~ 20335304 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_18067035_18082396 NECAB3 coding CI01000340 null 18067035 ~ 18082472 (+)