AMCG00021485


Basic Information

Item Value
gene id AMCG00021485
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19279765 ~ 19294779 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021485
atgcGGGGCAGACCAGAACCCGAATCCGAGCGCCAGTCTGCTGACACTATATCAGAGTCACGTGttggtgtgttttattgtgtgaaCCCCTCAGACCCCTACTCCGGACAGGGCAACAGTTTCCACAGCAGTGGAGGCAGGGGCAGTAAGCGGGCCCACCTGCGCCACTGCGTGCGGCTGCTGCGGAGCGTGGCGGCCCTTGGGGACGAGCTGCTCACGGAGGACCTCAGCGACCAGGGCGCCATCGGCCAACTGCTGGGTGAGGCCACGGGCACAGGCTCTGTCTGGACTCGCACCTGCAGCCAGGGCAGGGCAGGTCTTGTGTTGTTGGATGCTACCCAACAGAAGACTTGTTTCTGGAGAAAGGAGGCGTCCTCCTTCTGCTGGACCTGCTCCAGAAACATGCAGGATGTGGTTCTCGGGACGTTACTGGAGTTGTGTGACAATTCCAAGACCCCTGCGCACATCAGCTCCTGGAGGGGCAAGAAGGGTGAGACGGCCGCTGGGCTCCTGGTGAGGCTCTGGAGGGCCCAGGAGACGGAGCTTGGCGTGAGGCGGGACGCTAGTGGGAGGATTGTGGGCTTTGAAGACTTGCCTGGATTAAGGACAGAAGACTATGTGACGATCGCTGTCATCAGCAGATACTTGGACTTCAAGGTCGGAGAGGTTTGGGCCGAGATCTCCCGAGAGCTGGAGGCTGAAGGAGTCAGACCCGTCTCTCCAGACCAGGAGGCACTGCAGAGTATCGGCAGGACAGCAGAGGAGGCGGCCCGGGCCGTGGCCGCCCTGCAGACCCAGCTGCTGGGGCAACAGCGACAGCAGGAGCTGCGGGAGGAGCAGCAGCTGTACTCGGAGAGCTTCTGTGGGCGTTCGGTGCAGGTCGAGAGCACCCCTGTGCAGCTGACCGGGGGACCCCTGGCAGGCACCGACCTGGCCCTGGATCGGCTGTCCGTCAGAGGAGGCGCCCTGCGCAGCACCAGGCCCGCTCAGCCCCCAGGCTCGGTACCGGTGCAATAA
>TU107757
CTCGTGCCCCTGCTGCCCCAGGACTACCTCACCTGCCAGGGCAGCACGCGCCTGCTGCTGCTCATGGACTGGTGCGTCTCGGCAGACCCCTACTCCGGACAGGGCAACAGTTTCCACAGCAGTGGAGGCAGGGGCAGTAAGCGGGCCCACCTGCGCCACTGCGTGCGGCTGCTGCGGAGCGTGGCGGCCCTTGGGGACGAGCTGCTCACGGAGGACCTCAGCGACCAGGGCGCCATCGGCCAACTGCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021485 True 1017 mRNA 0.63 7 19281051 19294779
TU107757 False 251 TUCP 0.70 2 19279765 19282915

Neighbor

gene id symbol gene type direction distance location
AMCG00021479 NA coding upstream 32087 19232128 ~ 19247678 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding upstream 59491 19202878 ~ 19220274 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding upstream 99244 19164678 ~ 19180521 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding upstream 160197 19107777 ~ 19119568 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding upstream 233915 19031291 ~ 19045850 (+)
AMCG00021484 NA coding downstream 4757 19299536 ~ 19307124 (+)
AMCG00021488 NA coding downstream 47041 19341820 ~ 19342824 (+)
AMCG00021491 NA coding downstream 89250 19384029 ~ 19391754 (+)
AMCG00021493 NA coding downstream 127945 19422724 ~ 19446623 (+)
AMCG00021492 NA coding downstream 165685 19460464 ~ 19465577 (+)
G86323 NA non-coding upstream 20910 19258458 ~ 19258855 (+)
G86309 NA non-coding upstream 52997 19224453 ~ 19226768 (+)
G86284 NA non-coding upstream 126483 19153015 ~ 19153282 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 599889 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 615232 18663193 ~ 18664533 (+)
G86367 NA non-coding downstream 97318 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 153950 19448729 ~ 19449107 (+)
G86419 NA non-coding downstream 291210 19585989 ~ 19587369 (+)
G86454 NA non-coding downstream 535037 19829816 ~ 19837813 (+)
G86455 NA non-coding downstream 557590 19852369 ~ 19894619 (+)
AMCG00021472 NA other upstream 224662 19047049 ~ 19055103 (+)
G86121 NA other upstream 1030079 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1806369 17470325 ~ 17473396 (+)
G85869 NA other upstream 2275634 16997877 ~ 17004131 (+)
G85787 NA other upstream 2565727 16656644 ~ 16714038 (+)
G86407 NA other downstream 205021 19499800 ~ 19501242 (+)
G86601 NA other downstream 1047831 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1073374 20368153 ~ 20371536 (+)
G86616 NA other downstream 1083644 20378423 ~ 20380424 (+)
G86688 NA other downstream 1372691 20667470 ~ 20667927 (+)

Expression


Co-expression Network