AMCG00021488


Basic Information

Item Value
gene id AMCG00021488
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19341820 ~ 19342824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021488
ATGTCCTGCCGAGACATCCATGCCACCACCGCCCTGGCCTTTGTGGTGGCGTTGCTGTCGCTGGGGGCGCTGCTTACGGCCACCCTGGTGCCCCAGTGGAGGGTGACCAGCCTGAGCACCTTCAACAAGAACGCCAAGAACGTCACCATCTACGACGGGCTGTGGGCCAAGTGCGTACGTCAGGACGGCAGCAGCGGCTGCCTGATCTATGACTCGGAGTGGTACTCCAAAGTGGACCAGTTGGACCTGCGGGTGCTGCAGTTCGCCCTCCCAGTCAGCatcttcttctcctccctctcgcTGCTGCTGGGCATGACTGGCATGTGCAAAACGACTTGCTGCCCCGGAGAGGCAGACGTGAATGCGGAGCGGTGCCTGGTGAACAGTGTGGGCTGCCACCTGGTGGCCGGTGTGCTGTACTTCCTGGCAGGGGGCGTGTCCATGGCCCCATCTGTCTGGTTCCTCTTCAGCACCGCAGAGCTGAACCAGAAGTTCGGGCCGCTGTTCTCGGTGGACTTCGCGGTGTACGTCGCCATCGGCGGGGCAGGGGGCCTGCTCCTGGCAGCCCTCCTGCTATTCCTGTGGTACTGCATGTGCAAGGGCCTGCCATCCCCCCTGTGGCTGCCCCTGCAGTCCCAGCCCCCTGTCGCACATGGCTTCCCCCCCTCTGGCGGCTACGCCTCCCCCGTGTTCCCCCCCCAGACCTATGTCCCGCCACAGTTCGCTGCTCAGGTCCCCAACCAGGCATACGTCCACGGATACCCCCCTCACATGCTGGCCCTGCAGGAGGCCCCCCAGCAGACATCCGCCCCTCACACCTACATGTCTCAGATCTCCGCCCCCGAGGGCTACGGTTCTGAGGCCAGCGTCCCCCAGAGCTATGCCCGTCAGAGCTACGCCTCCCAGTCCTATGGCTCCCCCAGCTATCTCTCCCCCCGCTACTCCACGCGCTCCCGGCTCTCCACCATCGAGATCGACATCCCCGTGCTCTCTCAGGAGCGCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021488 True 1005 mRNA 0.65 1 19341820 19342824

Neighbor

gene id symbol gene type direction distance location
AMCG00021484 NA coding upstream 34696 19299536 ~ 19307124 (+)
AMCG00021479 NA coding upstream 94142 19232128 ~ 19247678 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding upstream 121546 19202878 ~ 19220274 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding upstream 161299 19164678 ~ 19180521 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding upstream 222252 19107777 ~ 19119568 (+)
AMCG00021491 NA coding downstream 41205 19384029 ~ 19391754 (+)
AMCG00021493 NA coding downstream 79900 19422724 ~ 19446623 (+)
AMCG00021492 NA coding downstream 117640 19460464 ~ 19465577 (+)
AMCG00021496 NA coding downstream 127417 19470241 ~ 19471029 (+)
AMCG00021501 NA coding downstream 271371 19614195 ~ 19622221 (+)
G86323 NA non-coding upstream 82965 19258458 ~ 19258855 (+)
G86309 NA non-coding upstream 115052 19224453 ~ 19226768 (+)
G86284 NA non-coding upstream 188538 19153015 ~ 19153282 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding upstream 661944 18679113 ~ 18679876 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 677287 18663193 ~ 18664533 (+)
G86367 NA non-coding downstream 49273 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 105905 19448729 ~ 19449107 (+)
G86419 NA non-coding downstream 243165 19585989 ~ 19587369 (+)
G86454 NA non-coding downstream 486992 19829816 ~ 19837813 (+)
G86455 NA non-coding downstream 509545 19852369 ~ 19894619 (+)
AMCG00021485 NA other upstream 47041 19279765 ~ 19294779 (+)
AMCG00021472 NA other upstream 286717 19047049 ~ 19055103 (+)
G86121 NA other upstream 1092134 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1868424 17470325 ~ 17473396 (+)
G85869 NA other upstream 2337689 16997877 ~ 17004131 (+)
G86407 NA other downstream 156976 19499800 ~ 19501242 (+)
G86601 NA other downstream 999786 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1025329 20368153 ~ 20371536 (+)
G86616 NA other downstream 1035599 20378423 ~ 20380424 (+)
G86688 NA other downstream 1324646 20667470 ~ 20667927 (+)

Expression


Co-expression Network