AMCG00021494


Basic Information

Item Value
gene id AMCG00021494
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19393011 ~ 19409496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021494
ATGTCCACTGCAGAACCGGAGAAGCTGAGCCCTGTATCTGTGCTGCCCCCCTGCAGCGTGCACCGACTCTTCTCTCACTCTGAGGGCGCTGACAGCGGCGCTGTGATTAACACACTTGTCGTCTCATCCATTCACCAGTCTTTCACAGAGCAGGAGCGATCCTCGCAGTTGACCGTCTCTCTTGTGGTCGGCCTATTCTCCGTGAAGACTCTCATCGACAGGTCATGCTTCGACACGATAGATGACTCGGCGTCCGAATTCACCAACTTCGTCAGCTGGTTTGGCTATGAAAGTCCGCGCAGCTTCTGGGACTATGTGCGTGTGGCCTGCAGCAAGGTCCCTCACAACTGCCTGAGCAGCATCGAGAGCATGGAGAATGTCCGCGGCTCCCGAGCCAAGgGCCGAGCGTGGATCAGGGTCGCGCTGATGGAGAAACGCCTGTCAGAATACATCTCCACAGCGCTGAGGGACTTCAAAACCACCAGGAGGTTTTATGAAGACAGTGCCATCATTCTGGGGGAGGAGGCCCACCTGCTGGCAGACATGCTGATCGGGCTCAATGCCATCGATTTCAGtttctgtCTCAAAGGGGAGGGTCTGGATGGCAGCTGCCCTGCAGTCATTGACTACACTCCCTACCTGAAGTTCACTCAGAGCTCTGACAGCATCAGCAGTGACGAGGAGGAGCTGCGGACCCTGGGCAGCAGTGGCAGCGAGGGCAGCTCGCCCGAAAGCCTGGAGCCCACTGTGTTCCTGGACCAGAGCAGCTGGTACAGCAAGTGCAAGAGAGTGGAGCAGAAGTACCGGTTGGCCCTGGAGCAGAAGGGTTACCTAGAGGAGCTCGTCCGCCTGCGCGAGTCCCAGCTGTCCGAGTCCGTCTCCCAGAACAAGGTGCTGCTGCGGCGGATGGCGGAGACGGACCTCAGCCACAAGATGGAGAAGGAGCAGCTGGAGTTCATTGTCCTGGAGCTGCAGGACCAGCTgactgttCTGAAGAACCACGACCTGCGATCCCGGCAGGAGCTCACGGCCCACCTCACCAATCAGTGGCCGTCTCCGGGGGCTCTGGATGCCAACGCTGTCGCCCTGGACACCCTGCTGTACCAGAAGCACGCGGGTCACTGGGGCGAGAAGAGTTTCCACAGCCTAGAGCAGCTCTCTGCCGAAATCAGCCTGTCCCAGAGCTCCCTGGACCCGGCCCACATCCCCGACCTGGACGGGAAACACGAGGGGTCCCACTCACAGAGCGACGGGAAGGAGGAGACCCCGTCCTTGCTGGGCCTGTGTGGCTCCCTGACATCCGTGGCCAGCTACAAGTCCCTAGCAAGCCTCAAGTCCAGCGAGTGCCTAGCCAGCCCCACCACAGAGATGACCAGCCCGGGACTCACCCCCTCCTGAGTGCGGCTCCAGGGCCGAGGCTGGGGGGCTGAGACCGTGTCTTCTGTGCGTCTTCACTCCATCCTGCCATCCGTCTCCAAAGGCCTAGAGCTACAGAGAGACATGGCTTACTGTTCTGTTTGTTACGGTCTTTTCTGTCCCCTTTATTGAGCAGCTTTCATGAACATATGACCGTCTTGCCCCTGCTCTGTCAGCGGTATCATCTACTCCATCACTTCCATCCCAGCAGCTGGTCTTGGGCGGCAGTTTTCTTCCACAAGCACAGCCTTTGACCTAGGGAGGctccagacagagagagagatcactTCCAGGAATCTGCTGAAACCACTGTTTTTGGTAGCACACATGAAAGCATGGTGTAAAACTTGTGGTTCTTGCATGAGGGAGGAGAACGTGTGACCCTCTGAGTATTTAAGTTGGGTACTATAACCAGGAGAGAGTTTTTCTTTGAGATTTGTTGTAATGTTTACAGAGGATGTGTCCGACTAAAATGGGTTAAACTACTGGAACAGGCCTGTCAGTGCAGGGCAACTGGGTTAACACACCTGAAGTCACTGCAGGAAAGACGCCTGGTTTGATCTGGATGTTGCCTCGTGGCAGAAATGTTGCCTCGGCTTGGGATGGACGTGCCCCTTAATGTTAGCATCGGCctttttattactgtttgttttgaatccTGTGAAACATCAGAAGAAGCCATAGTTGTGCAAAGCTTCGGCGGTGATCGGTCTTGTCTGTGCCTTCGTTCGTCCAGCTTTACTGTCATGCTTTGAAAGCGTCTCTTCTCATGGAAGTGAGGAGGCCATGCTGGGCGCTGCTGCCCGGCCCTTTACAGGACCTGAATGTTTCTGTTTACAGATCGTGCTGAATGCTTTTAATCTCAAGATTTGCTGACCTTTTAAGAAGCCTTTTATCTACACAAACAACAAACcttatttttagttgttttttcattccctCTGAGGAATTTACATCGTACTTTTGGATACAAATTCTACTAATATGAGTCCTAGTTTAAAGTACCGAAGCACTGAACAACAGATCCCACGTacgtgtattttgtatttgcttgtgGTTGTTTCATCTACTGTGTTCAGTGTTTGAATGTGGTTTTAATGGCTCTATTTCCTGTCACTAATTAACTTAAATATACTGTTTGGTTTTAATCAATCAGAAACCTATACCTCAAAATGTACGCATATCACAGTAATGTACCAATTTCTTAAAATTCCCGAAGAATGTAATGTGATCAATTTGATAGATCTGTAGGTCTttgctgcttgtgttttttaaggttATGTTTATTCTGCCAAACCGTGGGAGACGACCAAAGCAAATTaggattattataattgatttgttttactcACCCTAGATTAGATTCTTAACCTGGTCACTCCTGAGCTCAATAGTTTTACATTCACTACGTTTGTGTTGTGAAAACTGGAGTGAGATGAAGCACCTTAGTATAAACTCGCCACTTTAGGggtcatttgtgttgttttgtgttcttcttCCTTATTGTGCAATAGGAGACCCAGATCTGTCACTCACAGCAGTGCGCTTAGTATTGCTGCCTGGAGTTCCCTGacactgtgtgtgcgtgcattgTCTGTACATcagatattaattttatttgccAATTATTCCATTCTGTATTAATGTTTCCAAACATTTtttgtacttaatttaaataataaatttcTTTTCGATCGTG

Function

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021494 True 3115 mRNA 0.50 12 19393011 19409496

Neighbor

gene id symbol gene type direction distance location
AMCG00021486 NA coding downstream 9055 19376411 ~ 19383956 (-)
AMCG00021490 NA coding downstream 38620 19344966 ~ 19354391 (-)
AMCG00021487 adam22,LOC107719137,LOC107714333 coding downstream 53493 19307357 ~ 19339518 (-)
AMCG00021489 NA coding downstream 96112 19296483 ~ 19296899 (-)
AMCG00021481 NA coding downstream 140749 19248894 ~ 19252262 (-)
AMCG00021499 nmt2,LOC107738873,LOC107549229 coding upstream 63439 19472935 ~ 19482233 (-)
AMCG00021497 NA coding upstream 77132 19486628 ~ 19488734 (-)
AMCG00021500 NA coding upstream 90740 19500236 ~ 19503565 (-)
AMCG00021498 NA coding upstream 114032 19523528 ~ 19584960 (-)
AMCG00021502 LOC103376377 coding upstream 177723 19587219 ~ 19610896 (-)
G86324 NA non-coding downstream 134156 19258557 ~ 19258855 (-)
G86285 NA non-coding downstream 239726 19153005 ~ 19153285 (-)
G86253 NA non-coding downstream 386579 19005616 ~ 19006432 (-)
G86249 NA non-coding downstream 474480 18918254 ~ 18918531 (-)
G86244 NA non-coding downstream 581864 18750672 ~ 18811147 (-)
G86386 NA non-coding upstream 36921 19446417 ~ 19448494 (-)
G86474 NA non-coding upstream 490962 19900458 ~ 19900836 (-)
G86472 NA non-coding upstream 494500 19903996 ~ 19912403 (-)
G86477 NA non-coding upstream 503041 19912537 ~ 19918803 (-)
G86530 NA non-coding upstream 742724 20152220 ~ 20152767 (-)
G86327 NA other downstream 114988 19275354 ~ 19278023 (-)
AMCG00021483 NA other downstream 118571 19259434 ~ 19274440 (-)
G86241 NA other downstream 483103 18821533 ~ 18909908 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 1144117 18241237 ~ 18248894 (-)
G86049 NA other downstream 1466303 17926099 ~ 17926708 (-)
AMCG00021495 acbd7,LOC106595206 other upstream 36590 19446086 ~ 19468782 (-)
AMCG00021514 NA other upstream 871656 20281152 ~ 20284979 (-)
G86600 NA other upstream 919926 20329422 ~ 20335304 (-)
G86640 NA other upstream 948805 20358301 ~ 20360255 (-)
G86649 NA other upstream 986116 20395612 ~ 20397783 (-)

Expression


Co-expression Network