AMCG00021501


Basic Information

Item Value
gene id AMCG00021501
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19614195 ~ 19622221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021501
ATGGGAGGACAAGCTAAAGGCaagaagacaaacaaaagtAAACGGAAATCAAGGAACGGAAGCGGAGACCCTGGACTTCCAGGTCTGTCTGGACAAGAGAGaaggaaactgaaaatgcaagagaaagcaaagaagaaaacggctgaaaaatacaatgtggaGCAGCTTCTAGAAAAGATGGAAGAATACATGGACAACTTTGACTTTGAAATGGCCCAGATGTTTTGCCAGCGAGCGTTGGACATCGAGCCCACGAATCTCAAGATCCTGGACATGCTTGGAAACATCTGTGCAGAGTTGGGCAACGTGGACAAGGCCAAACAAGTGTTCCTCCGAGCCGTGGAGCTCAGCCCAGACCAGGGCCACAGCAAGTACATGTACCTGGGTCAGATCCACACGGGCCTGGAGGCGGTGCAGTACTTCAGCAAAGGCATCGAAGTCATGCTCAACGCTCTGGAGCAGCCGGCCCAGGTGGCGGCAGCGGCGTCTCCTGCTGATGACCCTGAACTGACAAACAAGGATATTTCGGTGGCCTTCTGCGCCGTGGCAGAGATTTTCTTCACTGACCTCTGCATGGAGGAGGGAGCGTCCGACAAATGCAAGGAAGCCATCGAGAAGGCCTTGCAGTACAACCAGGACAACCCCGAGGCCCTGCAGCTCATGGCCAGCTACCTCTTCAGCAGCGAGAAACCGCAGGAGGGAAAGGAGTTCCTCATGAAGAGCGTGGGGTTCTGGCTGCCCAGCCTGAGACGGGGACCGGAGCCGGGGTGGCGTGGGGAGCAGAGCGACCCGGAGGAGCAGATAGTGGTTAGCATGCGGAGCGGCTCCTCGGCCGTCCAGTGGATGTGA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021501 True 849 mRNA 0.55 8 19614195 19622221

Neighbor

gene id symbol gene type direction distance location
AMCG00021496 NA coding upstream 143166 19470241 ~ 19471029 (+)
AMCG00021492 NA coding upstream 148618 19460464 ~ 19465577 (+)
AMCG00021493 NA coding upstream 167572 19422724 ~ 19446623 (+)
AMCG00021491 NA coding upstream 222441 19384029 ~ 19391754 (+)
AMCG00021488 NA coding upstream 271371 19341820 ~ 19342824 (+)
AMCG00021505 NA coding downstream 291311 19913532 ~ 19918822 (+)
AMCG00021506 NA coding downstream 315518 19937739 ~ 19945655 (+)
AMCG00021510 NA coding downstream 349752 19971973 ~ 19975104 (+)
AMCG00021507 NA coding downstream 353382 19975603 ~ 19982429 (+)
AMCG00021511 cdk14 coding downstream 400301 20022522 ~ 20057785 (+)
G86419 NA non-coding upstream 26826 19585989 ~ 19587369 (+)
G86387 NA non-coding upstream 165088 19448729 ~ 19449107 (+)
G86367 NA non-coding upstream 219321 19392097 ~ 19394874 (+)
G86323 NA non-coding upstream 355340 19258458 ~ 19258855 (+)
G86309 NA non-coding upstream 387427 19224453 ~ 19226768 (+)
G86454 NA non-coding downstream 207595 19829816 ~ 19837813 (+)
G86455 NA non-coding downstream 230148 19852369 ~ 19894619 (+)
G86529 NA non-coding downstream 530024 20152245 ~ 20152766 (+)
G86536 NA non-coding downstream 582971 20205192 ~ 20205538 (+)
G86573 NA non-coding downstream 676241 20298462 ~ 20298782 (+)
G86407 NA other upstream 112953 19499800 ~ 19501242 (+)
AMCG00021485 NA other upstream 319416 19279765 ~ 19294779 (+)
AMCG00021472 NA other upstream 559092 19047049 ~ 19055103 (+)
G86121 NA other upstream 1364509 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 2140799 17470325 ~ 17473396 (+)
G86601 NA other downstream 720389 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 745932 20368153 ~ 20371536 (+)
G86616 NA other downstream 756202 20378423 ~ 20380424 (+)
G86688 NA other downstream 1045249 20667470 ~ 20667927 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 1286596 20908817 ~ 20912002 (+)

Expression


Co-expression Network