Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00021517 |
| gene name | gatad1 |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 20368153 ~ 20371536 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| gatad1 | Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within regulation of transcription, DNA-templated. Located in I band and nucleus. Is expressed in several structures, including brain; gut; heart; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2B. Orthologous to human GATAD1 (GATA zinc finger domain containing 1). |
| description |
|---|
| PREDICTED: GATA zinc finger domain-containing protein 1 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00021517 | False | 687 | mRNA | 0.59 | 4 | 20368153 | 20371016 |
| TU108113 | True | 740 | lncRNA | 0.46 | 2 | 20370645 | 20371536 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021518 | NA | coding | upstream | 28415 | 20314180 ~ 20339738 (+) |
| AMCG00021513 | NA | coding | upstream | 93770 | 20214149 ~ 20274383 (+) |
| AMCG00021512 | fzd1,LOC106605515,LOC105910048,LOC107565291 | coding | upstream | 254058 | 20112413 ~ 20114095 (+) |
| AMCG00021511 | cdk14 | coding | upstream | 310368 | 20022522 ~ 20057785 (+) |
| AMCG00021507 | NA | coding | upstream | 385724 | 19975603 ~ 19982429 (+) |
| AMCG00021522 | NA | coding | downstream | 18221 | 20389757 ~ 20393261 (+) |
| AMCG00021526 | NA | coding | downstream | 109675 | 20481211 ~ 20493174 (+) |
| AMCG00021527 | vps50 | coding | downstream | 134489 | 20506025 ~ 20524326 (+) |
| AMCG00021530 | vps50 | coding | downstream | 160632 | 20532168 ~ 20550930 (+) |
| AMCG00021529 | NA | coding | downstream | 182957 | 20554493 ~ 20563626 (+) |
| G86573 | NA | non-coding | upstream | 69371 | 20298462 ~ 20298782 (+) |
| G86536 | NA | non-coding | upstream | 162615 | 20205192 ~ 20205538 (+) |
| G86529 | NA | non-coding | upstream | 215387 | 20152245 ~ 20152766 (+) |
| G86455 | NA | non-coding | upstream | 473534 | 19852369 ~ 19894619 (+) |
| G86454 | NA | non-coding | upstream | 530340 | 19829816 ~ 19837813 (+) |
| G86625 | NA | non-coding | downstream | 36868 | 20408404 ~ 20409658 (+) |
| G86633 | NA | non-coding | downstream | 90719 | 20462255 ~ 20462991 (+) |
| G86665 | NA | non-coding | downstream | 129250 | 20500786 ~ 20501303 (+) |
| G86668 | NA | non-coding | downstream | 136972 | 20508508 ~ 20547410 (+) |
| G86685 | NA | non-coding | downstream | 241090 | 20612626 ~ 20614365 (+) |
| G86407 | NA | other | upstream | 866911 | 19499800 ~ 19501242 (+) |
| AMCG00021485 | NA | other | upstream | 1073374 | 19279765 ~ 19294779 (+) |
| AMCG00021472 | NA | other | upstream | 1313050 | 19047049 ~ 19055103 (+) |
| G86121 | NA | other | upstream | 2118467 | 18248490 ~ 18249686 (+) |
| AMCG00021441 | NA | other | upstream | 2894757 | 17470325 ~ 17473396 (+) |
| G86616 | NA | other | downstream | 6887 | 20378423 ~ 20380424 (+) |
| G86688 | NA | other | downstream | 295934 | 20667470 ~ 20667927 (+) |
| AMCG00021539 | pdk4,LOC107722149 | other | downstream | 537281 | 20908817 ~ 20912002 (+) |
| AMCG00021550 | NA | other | downstream | 726883 | 21098419 ~ 21109368 (+) |
| AMCG00021551 | NA | other | downstream | 787088 | 21158624 ~ 21165500 (+) |
