AMCG00021527 (vps50)


Basic Information

Item Value
gene id AMCG00021527
gene name vps50
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20506025 ~ 20524326 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021527
ATGTCCCTTCATGCTCCGTTAGGTGTTCAGCTGCTTGTTGTCGTTCTTCCCGTGGGGGTGACCTGGAAACCGCGTTTGCTGACCCTCgccatgtgcttttcttttcaccAGGAGGAGCTTCGGGAAATGAGAGAACAGCCCATCGACCCACAGGCTGAGCAGGAAATAATTAATAGCATCGAAGAAGTCTACTTTTCCAGTGATTCGTTTGACATTGTTCAGCATGAGCTGGAGAAGCTGCCTCCAGTTCTCAATATTCAAGAGCTTGAAGAGTACAGAGACAAGCTGAAGAAGCAGCAGGCCGCCgttTCCAAGAAAGTGGCCGACCTGATCCTGGAGAAGCAGCCGTCCTATGTGAAGGAACTGGACCGAGTGACTTCCTTGCAGACGAACCTGCAGCTCGCAGCCGTGATCTGCACGAATGCACGGAGgCATCTCACGTTTGCGAAGGAGGGCTTCACGCAGGCCAGTCTGGGTCTGCTGGCCAATCAGCGTCGAAGGCACCTGCTCACAGGGCTGCTCAAGTCTCTCCGGACCATCAAGACTCTGCAAAGAACCGACGTGAGGCTCAGTGAGATGTTGGAGGAAGAAGATTACCCCGGAGCGATACAGTTGTGTTTGGAGTGCCAGAAAGCCGCCAGTACGTTCAAGCACTACAGTTGTATAAGcgAATTACACTCAAAGCTGCAGGACACGCTGGAGCAGATTGAGACGGCCATGGACCAGCTCCACATGCACTTCACGCAGGCCATCCACAACACCGTGTTCCAGGTGGTCCTGGGGTACGTGGAGCTGTGCGCCGGCAACGCCGACACCAAGTTCCAGAAGATGCAGTACAAAGACCTCTGCACGGAGCTGCAGTGTCGTGGGGGCTGGTAG

Function

symbol description
vps50 Predicted to enable SNARE binding activity. Predicted to be involved in endocytic recycling. Predicted to act upstream of or within retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is expressed in head and heart. Orthologous to human VPS50 (VPS50 subunit of EARP/GARPII complex).

NR:

description
PREDICTED: syndetin isoform X2

GO: NA

KEGG:

id description
K23288 VPS50; syndetin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021527 True 879 mRNA 0.54 11 20506025 20524326

Neighbor

gene id symbol gene type direction distance location
AMCG00021526 NA coding upstream 12851 20481211 ~ 20493174 (+)
AMCG00021522 NA coding upstream 112764 20389757 ~ 20393261 (+)
AMCG00021518 NA coding upstream 166287 20314180 ~ 20339738 (+)
AMCG00021513 NA coding upstream 231642 20214149 ~ 20274383 (+)
AMCG00021512 fzd1,LOC106605515,LOC105910048,LOC107565291 coding upstream 391930 20112413 ~ 20114095 (+)
AMCG00021530 vps50 coding downstream 7842 20532168 ~ 20550930 (+)
AMCG00021529 NA coding downstream 30167 20554493 ~ 20563626 (+)
AMCG00021528 vps50 coding downstream 53367 20577693 ~ 20589296 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding downstream 178778 20703104 ~ 20721264 (+)
AMCG00021535 NA coding downstream 210388 20734714 ~ 20782173 (+)
G86665 NA non-coding upstream 4722 20500786 ~ 20501303 (+)
G86633 NA non-coding upstream 43034 20462255 ~ 20462991 (+)
G86625 NA non-coding upstream 96367 20408404 ~ 20409658 (+)
G86573 NA non-coding upstream 207243 20298462 ~ 20298782 (+)
G86536 NA non-coding upstream 300487 20205192 ~ 20205538 (+)
G86685 NA non-coding downstream 88300 20612626 ~ 20614365 (+)
G86687 NA non-coding downstream 96180 20620506 ~ 20620721 (+)
G86695 LOC103362787 non-coding downstream 174888 20699214 ~ 20702457 (+)
G86727 NA non-coding downstream 376701 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 510776 21035102 ~ 21038425 (+)
G86601 NA other upstream 104776 20342610 ~ 20401249 (+)
G86616 NA other upstream 125601 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 134489 20368153 ~ 20371536 (+)
G86407 NA other upstream 1004783 19499800 ~ 19501242 (+)
AMCG00021485 NA other upstream 1211246 19279765 ~ 19294779 (+)
G86688 NA other downstream 143144 20667470 ~ 20667927 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 384491 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 574093 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 634298 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 705526 21229852 ~ 21232853 (+)

Expression


Co-expression Network