AMCG00021528 (vps50)


Basic Information

Item Value
gene id AMCG00021528
gene name vps50
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20577693 ~ 20589296 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021528
ATGAGGGACTCAGCCACAGAGAGTGCGGGCAGCCATGGTGCCCCGGAGGAACGGAAAGAGAAAGTGCCCAGTCCTCACCTCAGCCAGCTGGTCATCCTGACAGGCAGTGGGACGCTATATGGACTTGCGGAAAGGGTGGTGGCAACAGAATCCCTGGTTTTCCTGGCCGAGCAGTTTGAGTTTCTTCAGCCTCATCTCGACACCATGATGCCGTCGGCCAAGAAGCCCTTCCTGCAGCAGTTCTACTCACAGACCGTGTCGATGGCCAGCGAGCTGCGGAAACCGATCTACTGGATCGTGGCGGCCAAAGCCATCGACTATGAACAGATGTTGATGCTCATGGCTGGTGTTAAGTGGGACATAAAGGAAATCATGTCTCAACATAACATCTACGTGGACGTCCTGTTGAAGGAGTTCGAGCAGTTCAACAAGAGGCTGGGTGACGTGTCCAGGCACGTCCGCATCCCCCTGGCCGTGTCCAACGTCCTATGGGAGCATTGCATCCGCCTGGCCAACCGGACGCTGGAATACTCCATGAAGCAGCTGACGAACCTGGTGAACGTGTGCCTGGGATCGCACATCAACAAGAAAGCGAGACAGAAACTGCTGGCGGCGATCGACGACATCGACAGACCGAAGAGAGATAACATTCTCAAAGATGGTGACAACGTATTGCATGGTTTAACCTCGTAG

Function

symbol description
vps50 Predicted to enable SNARE binding activity. Predicted to be involved in endocytic recycling. Predicted to act upstream of or within retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is expressed in head and heart. Orthologous to human VPS50 (VPS50 subunit of EARP/GARPII complex).

NR:

description
PREDICTED: syndetin isoform X2

GO: NA

KEGG:

id description
K23288 VPS50; syndetin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021528 True 693 mRNA 0.55 7 20577693 20589296

Neighbor

gene id symbol gene type direction distance location
AMCG00021529 NA coding upstream 14067 20554493 ~ 20563626 (+)
AMCG00021530 vps50 coding upstream 26763 20532168 ~ 20550930 (+)
AMCG00021527 vps50 coding upstream 53367 20506025 ~ 20524326 (+)
AMCG00021526 NA coding upstream 84519 20481211 ~ 20493174 (+)
AMCG00021522 NA coding upstream 184432 20389757 ~ 20393261 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding downstream 113808 20703104 ~ 20721264 (+)
AMCG00021535 NA coding downstream 145418 20734714 ~ 20782173 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding downstream 208402 20797698 ~ 20827291 (+)
AMCG00021536 NA coding downstream 240557 20829853 ~ 20842424 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding downstream 285827 20875123 ~ 20886781 (+)
G86668 NA non-coding upstream 30283 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 76390 20500786 ~ 20501303 (+)
G86633 NA non-coding upstream 114702 20462255 ~ 20462991 (+)
G86625 NA non-coding upstream 168035 20408404 ~ 20409658 (+)
G86573 NA non-coding upstream 278911 20298462 ~ 20298782 (+)
G86685 NA non-coding downstream 23330 20612626 ~ 20614365 (+)
G86687 NA non-coding downstream 31210 20620506 ~ 20620721 (+)
G86695 LOC103362787 non-coding downstream 109918 20699214 ~ 20702457 (+)
G86727 NA non-coding downstream 311731 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 445806 21035102 ~ 21038425 (+)
G86601 NA other upstream 176444 20342610 ~ 20401249 (+)
G86616 NA other upstream 197269 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 206157 20368153 ~ 20371536 (+)
G86407 NA other upstream 1076451 19499800 ~ 19501242 (+)
AMCG00021485 NA other upstream 1282914 19279765 ~ 19294779 (+)
G86688 NA other downstream 78174 20667470 ~ 20667927 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 319521 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 509123 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 569328 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 640556 21229852 ~ 21232853 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014233 vps50 coding NC_007130.7 CM002903.2 40379771 ~ 40686675 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02709494_02814598 VPS50 coding CI01000054 null 2709489 ~ 2814900 (-)