Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00021532 |
| gene name | LOC103394147,LOC106952338,LOC107383304,LOC107085850 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 20703104 ~ 20721264 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: probable acyl-CoA dehydrogenase 6 |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| GO:0003995 | acyl-CoA dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| K11731 | atuD; citronellyl-CoA dehydrogenase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00021532 | True | 1359 | mRNA | 0.54 | 9 | 20703104 | 20721264 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021528 | vps50 | coding | upstream | 113808 | 20577693 ~ 20589296 (+) |
| AMCG00021529 | NA | coding | upstream | 139478 | 20554493 ~ 20563626 (+) |
| AMCG00021530 | vps50 | coding | upstream | 152174 | 20532168 ~ 20550930 (+) |
| AMCG00021527 | vps50 | coding | upstream | 178778 | 20506025 ~ 20524326 (+) |
| AMCG00021526 | NA | coding | upstream | 209930 | 20481211 ~ 20493174 (+) |
| AMCG00021535 | NA | coding | downstream | 13450 | 20734714 ~ 20782173 (+) |
| AMCG00021537 | col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 | coding | downstream | 76434 | 20797698 ~ 20827291 (+) |
| AMCG00021536 | NA | coding | downstream | 108589 | 20829853 ~ 20842424 (+) |
| AMCG00021541 | ppp1r9a,LOC107722146 | coding | downstream | 153859 | 20875123 ~ 20886781 (+) |
| AMCG00021540 | NA | coding | downstream | 169626 | 20890890 ~ 20898448 (+) |
| G86695 | LOC103362787 | non-coding | upstream | 647 | 20699214 ~ 20702457 (+) |
| G86687 | NA | non-coding | upstream | 82383 | 20620506 ~ 20620721 (+) |
| G86685 | NA | non-coding | upstream | 88739 | 20612626 ~ 20614365 (+) |
| G86668 | NA | non-coding | upstream | 155694 | 20508508 ~ 20547410 (+) |
| G86665 | NA | non-coding | upstream | 201801 | 20500786 ~ 20501303 (+) |
| G86727 | NA | non-coding | downstream | 179763 | 20901027 ~ 20902855 (+) |
| G86800 | NA | non-coding | downstream | 313838 | 21035102 ~ 21038425 (+) |
| G86833 | LOC107754811,LOC107672863,LOC107731557 | non-coding | downstream | 450826 | 21172090 ~ 21175659 (+) |
| G86859 | NA | non-coding | downstream | 515837 | 21237101 ~ 21238163 (+) |
| G86884 | NA | non-coding | downstream | 574267 | 21295531 ~ 21297780 (+) |
| G86688 | NA | other | upstream | 35177 | 20667470 ~ 20667927 (+) |
| G86601 | NA | other | upstream | 301855 | 20342610 ~ 20401249 (+) |
| G86616 | NA | other | upstream | 322680 | 20378423 ~ 20380424 (+) |
| AMCG00021517 | gatad1 | other | upstream | 331568 | 20368153 ~ 20371536 (+) |
| G86407 | NA | other | upstream | 1201862 | 19499800 ~ 19501242 (+) |
| AMCG00021539 | pdk4,LOC107722149 | other | downstream | 187553 | 20908817 ~ 20912002 (+) |
| AMCG00021550 | NA | other | downstream | 377155 | 21098419 ~ 21109368 (+) |
| AMCG00021551 | NA | other | downstream | 437360 | 21158624 ~ 21165500 (+) |
| AMCG00021561 | LOC106582151,LOC105891776,LOC106605261 | other | downstream | 508588 | 21229852 ~ 21232853 (+) |
| G86861 | mios,LOC106605261,LOC106582151 | other | downstream | 513806 | 21235070 ~ 21236080 (+) |
