AMCG00021535


Basic Information

Item Value
gene id AMCG00021535
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20734714 ~ 20782173 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021535
ATGGAGTACGCAGTGGTGCGAGACTGTCTTCTGGCCAGGGCAGGACTGGGGAGAACTTGGTTTGGACAATTGGTCTCCGgttccacattttgcatttcatccGCAGCTCTCCGTGACAATTCCAGGAATAATTCAGCGGATTTGCACGCATTGCTTCTGACAGTCTCTGAATCGAGGGACAAGCTGAATGTGTCTGCGCAGTTCGTTCCAGAGAGGGAGGAGCCACTGCGATGTCTTGGGTGGGGCTTGTTGAGCTGCAGACCTGGGGTTGATCTGAGGAGGTTAAAAGGGTCAGAGCTGAAGCATTCTTACAAACAGACACtcgcaaaaaaaaaaaagaaagaaagaaagacccTGTGGAGCCTCGCCTCTTTGTCCCCTGTGTTGACAAACATGCTGCGTTTCTGCTCCGTCAGCACAGGCAGAGGACCGAGCACCAGGCACCGCCTTCAGGCCGTCGAATTCCTCCCCATCCCTGCATCTCACTGGGCTGACGTATTCACTGAAAAAGTCCAGAGACGGGCGTTCAGGACGTGGAGTTGGGGGATGGGGGGCCTAACATATGCCATTGATTGGAACGAGAAGGACAAGCTAGGGGTTGATGAGACAGAGATGCCCCACAGAGCGCAGGGTTCGGTCAAACgccTTCAGTGGAGTCTGAATCCCGTCCAGAACTACCAATTTAAGAGAAATTATGTGTTAAGAACCGTGGGTCTGTGGAAGAACGTGGAAGGTACTTGTGATGTCATGTCCTCCGGTCACAGAACTGACATTGATGTTCCACAGCAGATTCATGTCCGCTCTGTACAGAACTGTGTGGCACCACGGCAGGGCTGGGACACCGAGAGACGCACGCGGGACGGAGCAAGGGAATGGCAGAGTGGAAACAGCAGGGTGGAGCATCAAAATCAGTTCTGGGCTGCAGGTGGGTCAGTCCGGACCGGTGTGTTGAATCACACTCAGAGAGAGGCAGTGGAAACAGTAACTCGAGCTGCTCCTCAGCCCGTCCTCAGCGTGCCTCGGCTCGCCCGCACAGACAACTCTCCTCCTCGCTGCATTCTCCtggcaggaaaaaaaagtcCCTTGAATTATTGTCTTGTTCCTGAGTGGGCTAGGGAGCTCAGCTTGGGCGATCTCTGCCTGGCCGCACCACATGATGCCTTGGTGGAGTCCCTGTGGTTTGAGAAACAGCATCAATTACAGCTGTTCACCATCCGCAGgAGCTGCAGAAACAGCTCCATCttaaaggggggggggaggacTAGAAGAAGCTGGAAAAAGTCAGTCATAGAAATCTCCCCCCCACTGGAATGTGTGACGTCACGAGCCAGACCTGTGAGCTCAGCAGAGGGGCGAAGACTGTGCTTCAGAGAATTGGCTCATGCGTTGACACATGTAAAGGGTGGCCTGGATTTTAATTCACACAGATACCCTTCGCAGTTAAGGATTCGGAGCACTCCTTACCAGTCACAGTACGGTACACACCCCTTTGTGTCCGGGGCGAAGAGGTGCCCGGACACTGATTTGCTGTTTGGTTTCGCCCTCGTTGCTCTCCGTGACATCTGTGTGGCCCCACCCACCGCACTGTTTACATCCCAGCACAAACACCCCCAACTGGCCCCCAGCGTCTGTGGAGCTGTGACCCTCAGAGGAGAGGAGGCTCTGTCTGCCAGCCTGCTGGACTTACATGAAGGGTTTACTTTACTCTGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021535 True 1710 mRNA 0.54 14 20734714 20782173

Neighbor

gene id symbol gene type direction distance location
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding upstream 13450 20703104 ~ 20721264 (+)
AMCG00021528 vps50 coding upstream 145418 20577693 ~ 20589296 (+)
AMCG00021529 NA coding upstream 171088 20554493 ~ 20563626 (+)
AMCG00021530 vps50 coding upstream 183784 20532168 ~ 20550930 (+)
AMCG00021527 vps50 coding upstream 210388 20506025 ~ 20524326 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding downstream 15525 20797698 ~ 20827291 (+)
AMCG00021536 NA coding downstream 47680 20829853 ~ 20842424 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding downstream 92950 20875123 ~ 20886781 (+)
AMCG00021540 NA coding downstream 108717 20890890 ~ 20898448 (+)
AMCG00021542 NA coding downstream 122215 20904388 ~ 20907786 (+)
G86695 LOC103362787 non-coding upstream 32257 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 113993 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 120349 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 187304 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 233411 20500786 ~ 20501303 (+)
G86727 NA non-coding downstream 118854 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 252929 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 389917 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 454928 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 513358 21295531 ~ 21297780 (+)
G86688 NA other upstream 66787 20667470 ~ 20667927 (+)
G86601 NA other upstream 333465 20342610 ~ 20401249 (+)
G86616 NA other upstream 354290 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 363178 20368153 ~ 20371536 (+)
G86407 NA other upstream 1233472 19499800 ~ 19501242 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 126644 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 316246 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 376451 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 447679 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 452897 21235070 ~ 21236080 (+)

Expression


Co-expression Network