AMCG00021536


Basic Information

Item Value
gene id AMCG00021536
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20829853 ~ 20842424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021536
ATGACAGACGCCCGCCGCCCCGCCACTCCGCCGGGTGAGGAAGCCGCGGCGCTAGAGGGGCAGAGCGGGCAGAGCGGGCAGAGCGGGCAGCCCGCCCCGGAGCCGCCGGCAGGGGGACGCCTGAGCCCCGACGTGCGCTCCTGGTTCAGCCCCTTCGCTGCGTCCCGTCTGTCTGCGTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAGCCTGGGCAAACGGGaaataaatcagtatttcaCCATCAAGAACGCCAAGCTGCTCTCCCTCGCCGCCGTCTTCCTGCTCACCGTGTTGCACTCGCTCTCTCGGCACTATGGAGGGGGGGACACGTGCGAATGGCTCCTGTCCAGCGGGAAGTTCCTGGGAGAGGGTGTGTGGCAGCCCTATGGTTGTATGATGCACAGATATAAAAGCACgGAAGCAAAGGATTGTCTCCACCAGAAAAGAGTCGCGTTCGTAGGGGACTCCCGCATCCGCCAGCTCTTCTACTCTTATGTGAAACTCATAAATGCAGATGTGAAAGAGGAAGGAAACAAGCACGAGAACATTCCTTTCGAAGACCGAAGCTCGTCGCTGAAAGTGGATTTCTTATGGTACGCAGAAGTAAACAACTCTATGAAGGATCAGTTGATGTCATGGACCGAGaaaacCGCCATGAAACCAGATATGATCGTCGTGGGAGCTGCCACGTGGTCGATTAAGCTACACAATGGCAGCAGCGAGACGCTCCACCAGTACAAGGCCAACCTCACGGCGGTGGCGTACGTGCTGCAGAGGCTGGCCGAGAGCAGCGATGTGTTCTGGGTCCTGCAAGACCCGGTGTACGAAGACCTGCTGAGCGACAACCGGAAGATGATCACCAACCAGCAGATCGACTGGTACAACGAGGCGGCGCTGTCCACCCTGAGCAGCGCGGAGAGGAGCGCCGACCTCCGGGTCAAGATCCTCAGAGCCTCCCGTCTGGCCGCGCAGGAGACCATGTCCGAGTCGCTGGACGGCCTCCACCTGACCGAGAGCACTAGAGACGTCGGCACGATGGTCCTAATGAACTCCGTCTGCAATAAGATCTTGAAACCCATCGACGGCTCGTGCTGCCATCCCCCGCCGCCCGCCACCACCGTCCAGCTGCTCACCGCCTGCTTCTTCCTGGCGGCCATCGGCGGCTTCCTGGCGCTGAACGTGCTCTGCTCGGAGCGGCACCGTAGGGGTAAGCACATGGCCGACGTGGAGAGCGGCGAGGACCGCAAGCCCGCCGGCGCCAACGCGGCCGCCACCCTGAAGGTGCCGTTCCACGCCGTGTGCAAGCTGGGCCTCATCATGGCCTACTTCTACCTGTGCGACCGGGCCAACGTGTTCATGAAGGAGCAGAAGTTCTACACGCACTCCACCTTCTTCATCCCCCTCATCTACATCGTGGTCCTGGGGGTTTTCTACAACGAGAACAGCAAGGAGACAAAGCTGCTCAATCGGGAACAGACGGACGAGTGGAAGGGCTGGATGCAGCTCGTTATTCTCATCTATCACATCTCCGGTGCCAGCGCGTTCATTCCCGTGTACATGCACGTCCGGGTCCTGGTCGCCGCGTATCTGTTCCAGACGGGCTACGGCCACTTCTCCTTCTTCTGGCTGAAGGGAGACTTCGGCCTGTACCGGGTCTGCCAGGTCCTATTTCGGCTTAACTTCCTGGTGGTCGTGCTGTGTCTGGTGATGAATCGATCTTACCAGTTTTACTACTTCGTGCCATTAGTAACTTTCTGGTTTGCGGTCATCTATGTGACTTTAGCGATGTGGCCCCAGATACTCCAGAAAAAAGCTAACGCCAGTGGGATCTGGCACCTGGGCGTGATGCTGAAACTGCTGGCCCTGCTGCTGTTCATCTGCTTTCTGATGTATTCGCAGGGAGCTTTCGAGAGTATTTTCTCCGTCTGGCCGATATCCAAGCTGTTTGAGCTGCAGGGGAGCGTGCACGAGTGGTGGTTTCGCTGGAAGCTGGATCGTTTTGCCGTGATTCATGGGATGCTGTTTGCGTTCGTGTACCTGCTGCTGCAGAAGTGCCAGGTGCTGTCCGAGGGCAAAGGAGAGCCGCTGTTCTCCAACAAAGTCTCCAACTGTTTACTCTTCGTTTCGGTCGTGTCTTTTCTGACCTATTCCATATGGGCGAGCAGTTGCAGGAATAAGACCGAGTGCAATGAACTGCATCCCTACATATCGGTTGTACAGATTTTAGCTTTTGTTCTCATCAGGAACATCCCTGGCTACGCGCGTTCTGTTTATAGTTCATTCTTCGCATGGTTTGGCAAGATCTCTTTAGAGCTGTTCATCTGCCAGTACCACATCTGGCTGGCCGCCGACACCAAAGGCATCCTGGTGCTGATCCCGGGAAACCCCATGCTGAACATCGTGGTGAGCACCTTCATCTTCGTCTGCGTGGCCCACGAGATCTCCCAGATCACCAACGACTTGGCCCAGGTCGCCATTCCCAAGGAGAGCCCGGCGCTGCTCAAACGGATGCTCATCACGGCCGTGTTCTTCATGGCTGTCCTGGTGCTGTCTATGCGCGAGCGGCCCGGACACTGAGCCCCCCTCGGGCCGCGGCGCCCCCCGTAACGGACGCCCCCGAGGGGAAGAGGGGGGCCGGACGCTGTGTGCGTGGAGGAGGCGGCGCTTTGTCGTTCTCGTGACGAGTGAAGCACCGAAGGACAcgacagttttgttttgtttttttgaataCAAGCAACTCGGCATCGTCTTGCTTTGATTTTTTCAATGTCTGttacacaaaaaaagaaggaaCAACAACAATCCTCGAGATACCTGGACACTCTGTATTTAAGTGTAAATTGAGGTGTTTCATACCGTTTTCTGTGCTCGTCGTTGTGGGTGGGTTTATTTTCTGTCCCTGAGACTGAAACTCGGACGGAAGTTCAGGCGTTTgtgactgtgttttgtttttattgtgactgAATCTTATTTCAGACCACGCAGAAATGCACTTTTTAGGTACCTTGAAACGTTTAGGAGGTCGTTAgatattattttgctttctgaCTTTAATGCTGCCGTCTGAGGGGTGAACAACCACTTTCATcactatatagatagatatagagcTGATCAATACCTCTTGATAGATGTTACCCCCATACGTCAGTAGCCGGGGTACCTGTGGAGctgaatttagttttgtttggttCTGCCTCGGGAGCCCGGACTGTCCCTGCCCGTCCCAATGCCTTGTACTGAAAGGGTCAAAGCGAGTGGGTTTGTGCGATTGCTCTGCAGccacatatacatttgtatctgatcttctatttattattatacatctaCAAATATTTATTCCTGATATAAGTAATTTATTATGAGATTTAAAGTTATTGTTAATAGAACAGTCTTTCCTCTGGAGGTCCCGAGGCCCGGCCGAGACCCCCAGCATCGAGGGATTCACCCGGCTTGAATGCGGTTTCTGACGAGCAAATGTCTATGGTACATTTCTTCTATTTCTATTAATCTCAAACACAGGCTGAGGCCTCCACGCCTCTCCAGTCCAGTCAGACCCACCGTGTCGACCCAGAGGCCCGTCTTACTGGACGCAGTGGTCCACAGACGAGAGCCGTCGCAGTTATTGTTTCTGTCCCCCTTTCATAAACACTGGATGTCGGAAAATATTTCCCCTTGTGGTCTTCCTTCGCCACAAGTGTTTTTCCACACACCAAAATAATGACAGGGGGCCGAGGAGGGGATGGGGGTCTGTACTGTCAGACGATTCTCTTTTCTTAGcagatttcttttgttttttaccgCAAGGGTTTATTTTCCTCCAGTTCCAGTGGATTTTAGGGTGTTTTGGAATGATCGTGGCTACAAGGGTAGCTGTGATGAACGCTGAGGTTGTGCTAGCTCatttattattcctttaaatGTTGCTAATGCTAcgcagtgacacacacacaaccacaatgGCCGCCAACTGGTGACAGTTTGGGGGGACAAACTATTTCCCACCTCCCTTCTTACTGACCAAATACCCTAGTCAAGGCCAGtacctttgtttcttttcaaagtcATGGGGGTCCGTGTTTTGATACTTATTTCACTTCGAAGATCTTCGTTTTCCTCACCAAGGTGTTTTGCAAATGTGTATGGACagatataatttaatacaagtGACCTGGACTTCATTTGAGACTCGAAATCAGCTCTGTTTTCAAGAAGACGAAAGGAAGATGTTTAGAATGATTAGAATAGGAATAAATGCTTTAGGTCTCCAACTGGACTGGACTTCGGCGTATGAATGTCCCAAAATGTGTACGAAATGCGTTTAAGCACTGAACACGGTGGTCTTTAAGCCACAAGCTTCTTGAACGGGTATTCTTAATTTGTAATTAggtctgaaattaaatgaaagctttTATACAGATGTTAACGTGCTTTGTGTTATAACTGAATGAAGGCCTTTATATAGAGTCATTGTTTACCTGTCTTTATTTAGCATTATCGTGCGCATGGCCTGGTCATGTGACCGAGGGACAGCACActgttgtgtatatttttgttatttttgctgttattatttaagAGAAAGACGCCAGTTACATGTTGATGAGccttgtttgttctttttgtcGACTCATGAATAGAGGGATGTTGTGTGTAGATCTTCCTGTGGTTTCTCAAGCTGACCTTcgaccatttttatttataaatgactTTATTCTGTtgaatataatttatgtttatgatAAAATTCCTTCTTAAAA

Function

GO: NA

KEGG:

id description
K03377 CASD1; N-acetylneuraminate 9-O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021536 True 4772 mRNA 0.51 18 20829853 20842424

Neighbor

gene id symbol gene type direction distance location
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding upstream 2562 20797698 ~ 20827291 (+)
AMCG00021535 NA coding upstream 47680 20734714 ~ 20782173 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding upstream 108589 20703104 ~ 20721264 (+)
AMCG00021528 vps50 coding upstream 240557 20577693 ~ 20589296 (+)
AMCG00021529 NA coding upstream 266227 20554493 ~ 20563626 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding downstream 32699 20875123 ~ 20886781 (+)
AMCG00021540 NA coding downstream 48466 20890890 ~ 20898448 (+)
AMCG00021542 NA coding downstream 61964 20904388 ~ 20907786 (+)
AMCG00021544 dync1i1,LOC102799504 coding downstream 87380 20929804 ~ 20940208 (+)
AMCG00021543 dync1i1 coding downstream 114805 20957229 ~ 20980625 (+)
G86695 LOC103362787 non-coding upstream 127396 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 209132 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 215488 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 282443 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 328550 20500786 ~ 20501303 (+)
G86727 NA non-coding downstream 58603 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 192678 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 329666 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 394677 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 453107 21295531 ~ 21297780 (+)
G86688 NA other upstream 161926 20667470 ~ 20667927 (+)
G86601 NA other upstream 428604 20342610 ~ 20401249 (+)
G86616 NA other upstream 449429 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 458317 20368153 ~ 20371536 (+)
G86407 NA other upstream 1328611 19499800 ~ 19501242 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 66393 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 255995 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 316200 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 387428 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 392646 21235070 ~ 21236080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014240 casd1 coding NC_007130.7 CM002903.2 41006975 ~ 41034224 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02514735_02525669 CASD1 coding CI01000054 null 2514659 ~ 2525669 (-)