AMCG00021537 (col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699)


Basic Information

Item Value
gene id AMCG00021537
gene name col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20797698 ~ 20827291 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021537
CACGGCAGCAGGTTTCTGCTAAGTTTGGAGTTACTCTGGTCACCACAACTGTATGCCTGCTTGTTATAATTAAAACCCAGGGCTCTGCAGCACAAGGAGTCTGCATGTCTGATTACTAGACATGCTCAGCTTTGTGGATACTCGGATTGTGTTGCTGCTTGCAGTAACTTCTTACCTAGCATCATGCCAATAAACCCTGTCCGCGTGGCTGACGCTGCCGTGTCCGTCCCTCTGTTCTCAGGGTCCTCGAGGTGCAAACGGCAGAGATGGTAAACCCGGACTTCCTGGCCCACCCGGCCCCCCTGGACCCCCTGGCCTCGGAGGAAACTTTGCTGCTCAGTATGACCAATCCAAATCTGCTGATCCCGGTCCAGGACCCATGGGCTTGATGGGAGCAAGAGGACCCCCCGGACCTCCTGGCTCTCCTGGCCCACAAGGTTTCCAGGGACACCCCGGTGAGCCAGGCGAACCCGGACAGACTgGCCCAGTCGGACCTCGCGGCCCTGCTGGTGGAGCTGGGAAATCCGGTGATGATGGTAACAATGGCAGACCCGGCAAACCTGGAGACAGAGGACCTGCCGGAGCTCAGGGTGCTCGTGGCTTCCCCGGAACCCCTGGACTTCCTGGCATGAAGGGACACAGAGGTTACACTGGCCTGGACGGACGCAAGGGAGAGCCTGGTGCAGCTGGTGCCAAGGGTGAAAATGGTGCTCATGGTGAGAATGGTTCTCCAGGACAGGCGGGTGCTCGTGGTCTCCCCGGTGAGAGAGGGCGTGCTGGCCCTGCTGGTTCAGCTGGTGCTCGTGGTAGCGATGGCAACAGTGGTCCCTCTGGCCCTGCCGGTCCTATTGGAGCAGCTGGTCCTCCCGGATTCCCAGGTGCCCTTGGACCTAAGGGAGAGATCGGAGCAGTTGGTGCCACTGGTCCCACTGGACCCCAGGGAGGCCGTGGTGAGCCCGGTCCCGCTGGAGCTGCCGGCCCTGTCGGACCCCCTgGAAACCCCGGAAACAACGGTCTTGCTGGTTCTAAAGGAGCTTCTGGCCCCCCTGGCATTGCTGGTGCTCCTGGTTTCCCCGGGCCAAGAGGCGGTCCCGGCCCACAAGGACCTGCTGGAGCGGCTGGTGCTAGAGGCAACAGCGGAGAGCCCGGCCCCGCTGGACCCAAGGGTGAGACCGGATCCAAGGGCGAGCCTGGCAACGTTGGTCCCCAAGGTGCCCCTGGCCCCTCAGGAGAGGAGGGCAAGAGAGGTCCCAATGGAGAGGCCGGCGCCAGCGGAGCTGCTGGCAACcgtggagagagaGGAACTGCTGGAACCCGTGGACTTCCTGGACTTGAGGGCAGAGCCGGCCCAATGgGCATGCCTGGCAGTCGTGGTGCCACCGGTGCCGCTGGTGGCCGTGGAGTTCCTGGTGATGCCGGCCGCCCCGGCGAGCCCGGACAGCTCGGCGCCAGGGGTCTCCCCGGAAGCCCCGGCAGCTCTGGACCCCCAGGAAAGGAAGGCCCATCTGGTGCCAGCGGTCAGGATGGACGCTCCGGACCTCCCGGCCCTGCCGGACCCAGAGGCCAGCCCGGTAACATCGGATTCCCCGGTCCTAAGGGCCCATCTGGCGAGCCTGGCAAGCCTGGCGAGAAGGGAGCAACTGGCCCCGCTGGTCTGAGAGGAATCGCTGGTCCCGATGGCAACAATGGTCCTGCTGGCCCCCCTGGACCCGCTGGCAACACTGGTGACAAAGGAGAACAAGGACCTTCTGGTGCTCCCGGATTCCAGGGTCTGCCTGGacctgctggagctgctggtGAGGCTGGCAAAGCCGGAGATAGAGGTATTCCCGGTGACGCTGGTCTCCCTGGACCCGCTGGTGCCAGAGGTGAGCGTGGAAACCCCGGACCTGCCGGATCTCAGGGCCCTCAGGGACCCATGGGCGCCCGTGGTCCTTCTGGACTTCCCGGACCTGATGGAAACAAGGGTGAGCCCGGTGCTGCTGGCCCCGTTGGACCTGCTGGCCACCAGGGTGCCTCTGGCATGCCCGGTGAGCGTGGTGGTGCCGGAACTCCTGGAGGCAAGGGCGAGAAGGGTGAGAACGGCCCAAGAGGATTCGAGGGTAACCCCGGAAGAGATGGTGCTCGTGGTGCTCCTGGACCCAGTGGACCCCCTGGACCCTCTGGTGCTAATGGTGACAAGGGTGAAACTGGTTCTTTCGGTCCCCCTGGACCTGCTGGACAACGTGGACCTCCTGGAGAGCGTGGTGAATCCGGCCCTGCTGGACCCCCCGGCTTTGCTGGTCCCCCTGGTGCTGATGGCCAAGCTGGAGCCCGTGGAGAGAGAGGTCCCGCTGGAGGCAAGGGTGACGTTGGTGCCCCTGGAGCTGCTGGTCCCGCTGGCAGCTCTGGACCCGCTGGTGCTTCTGGCCCCGGAGGTCCCGCTGGTCCACGTGGTGATGCTGGCCCTACTGGTGCTACTGGTTTCCCTGGTGCTGCCGGCAGAGTCGGCCCCGCTGGCCCTGCTGGAATCGTTGGGCCCCCCGGCCCCAGCGGCCCCTCCGGTAAGGACGGTCCCAGAGGTGCTCGCGGAGACTCCGGCCCAGCTGGACGCCCTGGAGAGCAAGGAATGGCTGGTCTGCCCGGTCCCCAAGGAGAGAAAGGCCAAACTGGAGAATCTGGTCCCCCTGGTCCCTCTGGTACTTCAGGCCCTCAGGGTATCCTGGGATCCCCTGGTATTGTTGGTCTTCCTGGTGCTAGAGGCGACCGTGGTCTCCCTGGCGGTGCTGGTGGAAATGGTGAGCCCGGTAAGCTGGGCCCCGCTGGACAATCTGGCCCCcgtggaccccctggcaacatGGGACCCCCTGGCATGACTGGACCCGTGGGAGAGGCCGGACGCGATGGCAACCCTGGTAACGATGGTCCCCCTGGTCGCCCTGGTGCTGCTGGGTTCAAGggAGACCGTGGTGAGCCCGGCTCTCCTGGTGGTGTTGGACCTGCTGGTGCCCCTGGAGCCCACGGACCCGCTGGTGCTGTTGGCAGACCTGGCAACCGCGGCGAGTCTGGTCCCTCTGGACCTCAAGGTGCCCTTGGCCAAGCCGGACCAAGAGGAGCTTCTGGCCCTCAAGGTCCACGTGGGTCCCAGTGGTGAGCAAGGATCTACCGGAGCAACTGGACCTTCTGGCCCAAGAGGTCCCCCAGGTGCTCCCGGTCTTCCCGGACCCGCTGGCGCTGCTGGTGGTGGCTACGAAATCGGCTACGATGAGTACAGAGCTGACCAGGCTGCCCTGAAGGCCAAGGACTACGAGGTCGATGCCACCCTGAAGTCCCTGAACACCCAGATCGAGAACCTGCTCAGCCCAGAGGGCTCCAAGAAGAACCCCGCCCGCACCTGCCGCGACATCAGACTCAGCCACCCCGAATGGAGCAGCGGCTATTACTGGATTGACCCCAACCAGGGCTGCACCATGGATGCCATCAAGGTCCACTGCGACTTCACCACCGGCTATACCTGCATCTATCCCCACCCTGCCAGCTTCGCCCGCAAGAACTGGTACAGAAGCTCTCAGGACAAGAAGCACGTCTGGTTTGGAGAGACCATCATTGGTGGCACTGAGTTTGCCTACAACGACGAGAGCCTGACTCCCCAGATGATGGCCACCCAGCTGGCCTTCATGCGCCTGCTGGCCAACCAGGCCACCCAGAACATCACGTACCACTGCAAGAACAGCGTGGCCTACATGGACGCCGAGACCGGCAACCTGAAGAAGGCCGTTCTGCTGCAGGGCTCCAACGACGTGGAGCTGCGCGCCGAGGGGAACAGCCGCTTCACTTTCAGCGTGCTGGAGGACGGCTGCACGAGACACACCGGCCAGTGGGGCAAGACAGTCATCGAATACAAAACATCGAAACCCTCTCGTCTCCCCATCCTCGATATTGCACCTTTGGACATTGGTGGAGCTGATCAAGAAATTGGTTTGGACGTTGGCCCAGTCTGTTTCAAATAAGTAGACTCatgataaattaaacaaaaagaaagaaaagaaaagaaatcaaaatcaaaaaatctCTCTcgccatttctgttttttttttatactgaatgCTGATTTCTTCTGCTCATCCACTTGCTTAAGCTCGGGCCTATCGGAGGAGACAATGGACTGAACGGAGCATTTGTGCAATGCAATTTAATACAGCCCCTTCCCCCCGCCCCTTTCCCCCAAGAGACGTGGGAATCACCTTGTTGTGGGACATGTcagcatttgtaaaataaaaaagtgaaataaaaacaatgaaagtaTGCACCATTTGTGGTCTTTGTATATCTTCCAAAGAGGAAGTTTAAAACCACAACTTCCAAAGGTTTGAACTACCTCATGCTTGTTTTAAAACCTGATCCACAtacttaatattttaacaaaggCAACTTATATCTCGGTCCTGTTAAAAAGGTGCTAAAAACAGTATTACACGGCTTAGATACTTGAAGCAGTGAAAATGGTGCTATACTCGGTGCTGCGTTTGAACAACCCAGCTCAAATCCTAACcacttttactgtattacaTTGTGTTGTACCGAAGATGGATTGTCACGCGGTTCTCTCTGATGACCCGTATTAAGCATGTGGATCAGTCCTAGgcctctgttttgtttttgttttgttttggttttttttctccctttttcttcAACCAGGTGTCCATGCTTTCAGCACATTTTTGTCCATTCGAATGGGTTTACGGAGGAATCTTTCTCTACGACAACAGCcaccaaaaattaaaaaaagtttattgtacctattttgtatatgtgagatgtttaaataaattgtgaaaagtTCTGAAATAAAGCATGTCCGATGTTCCGAAACACACCACTCAACGAGTAAAGTGCATTTATGTTACAAATGATCataccttttttctttgtttgttttcccaaagGGCAGAGATTTGGGGGAATCTTTTTAAAAGAAGCATCTGTATGTGTCTGGTGCCACAGGAACACTACTCATCACTAAGAGATATTGTTTTCCAATGTAATTATATGTAGATAAGCCCCCTTCCCCTCTGTGAGGTAACAGAATCAATTCCAAGATGGAATggaaaggaaaagcaaagaaatgagaagaaaactaaaaccatTGGCTTACGAAtgtcttttctttctcattcCACCTGGGTTCTTCATTACCTGTCGTGTGTTTGCAGTTGTCCCGTCTCCTGACACCACCCTCTTGTTTCCTCTTGCTTGAGGAAACCCATCTCTTCACGTTACTTTCCACCAGCTTGTACATATAACAAACCCTCAATCTCTGATGTAGTCGCATAGCATAGTCCAGGTTAAAATCTAATTGTATATCAGGTCATCTAGAGTTCCACGTCTTTCGAGCGAAAGGAAACTCATGCTGGTAAATAATACTCTGTTTATCCACATTTGAATCAGTGTTTCCTTTGACTGAAATGACTGAATTCCCTTTTTTTATCACTgtttcctaaaaataaaaagacatgtAC

Function

symbol description
col1a2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within response to mechanical stimulus and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen type I trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranium; integument; myoseptum; osteoblast; and pectoral fin. Used to study Ehlers-Danlos syndrome and osteogenesis imperfecta. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(I) chain-like

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021537 True 5501 mRNA 0.57 47 20797698 20827291

Neighbor

gene id symbol gene type direction distance location
AMCG00021535 NA coding upstream 15525 20734714 ~ 20782173 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding upstream 76434 20703104 ~ 20721264 (+)
AMCG00021528 vps50 coding upstream 208402 20577693 ~ 20589296 (+)
AMCG00021529 NA coding upstream 234072 20554493 ~ 20563626 (+)
AMCG00021530 vps50 coding upstream 246768 20532168 ~ 20550930 (+)
AMCG00021536 NA coding downstream 2562 20829853 ~ 20842424 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding downstream 47832 20875123 ~ 20886781 (+)
AMCG00021540 NA coding downstream 63599 20890890 ~ 20898448 (+)
AMCG00021542 NA coding downstream 77097 20904388 ~ 20907786 (+)
AMCG00021544 dync1i1,LOC102799504 coding downstream 102513 20929804 ~ 20940208 (+)
G86695 LOC103362787 non-coding upstream 95241 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 176977 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 183333 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 250288 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 296395 20500786 ~ 20501303 (+)
G86727 NA non-coding downstream 73736 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 207811 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 344799 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 409810 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 468240 21295531 ~ 21297780 (+)
G86688 NA other upstream 129771 20667470 ~ 20667927 (+)
G86601 NA other upstream 396449 20342610 ~ 20401249 (+)
G86616 NA other upstream 417274 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 426162 20368153 ~ 20371536 (+)
G86407 NA other upstream 1296456 19499800 ~ 19501242 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 81526 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 271128 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 331333 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 402561 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 407779 21235070 ~ 21236080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014239 col1a2 coding NC_007130.7 CM002903.2 40983221 ~ 41002980 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02529145_02537881 COL1A2 coding CI01000054 null 2528905 ~ 2537881 (-)