AMCG00021539 (pdk4,LOC107722149)


Basic Information

Item Value
gene id AMCG00021539
gene name pdk4,LOC107722149
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20908817 ~ 20912002 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021539
aggggccagggatgagaaggagcggctctggaggaaggagagtggagaggaggtgcccaacaccttactgatacactttatgtgggtttttcctttaatttgtcacctgactgtatatgtattcatgAATAAAACCCGAATGTCATGTTCAGCGGCTGTTAAAACGTAAAACAGCAGACACCAGTGAAACCAGAACATCAAACCCCAAACCTTGACAACACTGCCCAGAGATCCCATGAAGGAGAACGAATATGCTTTGCAGAACGTCGTCAACCCACAGCAAAATCTGCACGTTCTAGATTCCACACAGTCCGTTTCTTCTCCACACACAGTCACGGACACCTGGCTCACtggagtgtttgtgtttctttgtcaCCGgtagcttgtttgttttgcaggctGGCTTTGGCTACGGTCTGCCCATCTCACGTCTCTACGCCAAGTACTTCCAGGGAGATCTGCAGCTCTACTCCATGGAGGGATACGGCACATCTGCGGTTATTTATCTGAAGGCCCTGTCTACTGACTCAGTGGAGCGGCTGCCCGTCTTCAACAAGTCCGCCTGGAGGCACTACCAGGTGAGCCAGGAGGCGGACGACTGGTGCGTTCCCAGCCGCGAGCCCAAGAAACTGGGGAAACACGACTCCGGTGCATGAGACCATGAGGACGACCGCCGGACCCTCCACAGGCCGGCCGTCCGGGTTACCGATGGGAGACGGGGAACTCGTGggaccagacagacagacagacggacactTTTACCCGGACCAGGGAGGGTTAATCACAGCAGAACTTTTGGAGCAGGGGTGCAAATCCTGGTTCCTAATCTCTACAATAACAGGACTCCAGCTGACACGGACAGGGACTGAGACTGTGAATGTAAAGGCCATAAACGGTTAGTTACACTTCTAGGGTGTCTAGCAATCTTGTGCGTCTCCGTGTGTCTGGGGGACgcctggttttgtttgtttattcttgatTTTTAAGATTGAAACGGCGGCCAGTAAAATTGAGGTTAGTGTCGTCGACTCCGACAGCAGCCTAAACATGCGGGCGGGTAACGAGTGTCACCGAGTCTATATGTGGAGTTGTCGGTTTGCCATTCGTGCCCTAATCAGCATTTTCTTTGTGCGAACAACATTCGTCCTATTCCACCATCTAGTCCAAAGAGAGCCCGCGttgaccagagaattttgtttttcacttgccTGTAGTCGTGTCTCTAGTTCTTCTGGGAACACAGATGTTTTAGGCATTACTGTAGGGTCATATAAAtggaggaggacaaccccagTCTCACTCCTGACTGCTGCGTTCCTGAGCTCGTTATTATTTCCCTTCTACTGTACTTGTCTGTTGGGGTTGTCCGCACTCCGGAAGCTACCAGTATCATTACTACAAGTTTCATAAAACCTCCACACACCTGTGTCCCCACATGTGACCGTAAAGCAATAGCGTATCGATTCAAGCTGTGATTCATTGGTGTTTGAGCCTTATTGACTGAAGGCCAGGACTCATTGGGAATAACAAACCCTGGAAGAGACCCAGTCCTTTAGAAGCGTTTTAACTGCATGTGCAGATCTGTTATGGATCCAACGGttgaactattttatttttgtattattttagaatGAAGAATATCAGTCGTACACTTGGACCAGATTCAGTCCcgtttttgtttcattgctttTCTCAAGCGTGACTCATTCAGAGTCGCATGTTTTGTGAAACACACAGAATACCGGCTCTGAGAGACCGAACTGCGCTGCGATGCGACTCGTCTGTCTGGGACTGTGACTGTGCCGGGTGTCACGTcacaatcattaaaatatacagaatgaCGTATATAAACCTTTATACTATTCATTTGTGTCGTTTTTATTCACTGTTCATTTCATggttcaatatttgttttaatcggTGTTGTTTATCATAATTGATCCACTTTTTAAACATTCTTCATTTATGTCAGCATGCAGCCCTtctgttaatttgtttaacTGGATTCGGGAGGCGACCAGAGGAAATTCGGAAACAAATTGGCAGACTGCCGGGGATTTAACAAACAGTTTCAAAGTTTAGAGTCGGACTCACAGGCCTAATTGTATGTCTGTTGCACTTCTTACTCGGCAGTATTAAACACATGGGTTTCAAAAGGTCATGAGCTGAAAGAAACTAATTTAGTCACaaagattttatatttaaacaagaaGATGGAAAATTAGCTTTGATTTCTTACTattcacaaaaaaaatcaatgtgagGTATAATGTCTCGCTCGTTATCGCACAGATTTCCATGTCGGCCACCTCTCTTACTGACCTCAGATTAAACGTTTCTTTCTTCAGAGTATTGCTGTTCTGTTGCGTTGCTGTTGTATTGTCTAATCTCCACAATGCCTTATTTTCTGGGTGCCAAACAATGCAGTAAATGGGGTGTGTCTATGTTTTCTCCACGAATGTAActtggaaaatgaataataaataacaatatatctAAACTGCTACTGT
>TU108236
aggggccagggatgagaaggagcggctctggaggaaggagagtggagaggaggtgcccaacaccttactgatacactttatgtgggtttttcctttaatttgtcacctgactgtatatgtattcatgAATAAAACCCGAATGTCATGTTCAGCGGCTGTTAAAACGTAAAACAGCAGACACCAGTGAAACCAGAACATCAAACCCCAAACCTTGACAACACTGCCCAGAGATCCCATGAAGGAGAACGAATATGCTTTGCAGAACGTCGTCAACCCACAGCAAAATCTGCACGTTCTAGATTCCACACAGTCCGTTTCTTCTCCACACACAGTCACGGACACCTGGCTCACtggagtgtttgtgtttctttgtcaCCGgtagcttgtttgttttgcaggctGGCTTTGGCTACGGTCTGCCCATCTCACGTCTCTACGCCAAGTACTTCCAGGGAGATCTGCAGCTCTACTCCATGGAGGGATACGGCACATCTGCGGTTATTTATCTGAAGGCCCTGTCTACTGACTCAGTGGAGCGGCTGCCCGTCTTCAACAAGTCCGCCTGGAGGCACTACCAGGTGAGCCAGGAGGCGGACGACTGGTGCGTTCCCAGCCGCGAGCCCAAGAAACTGGGGAAACACGACTCCGGTGCATGAGACCATGAGGACGACCGCCGGACCCTCCACAGGCCGGCCGTCCGGGTTACCGATGGGAGACGGGGAACTCGTGggaccagacagacagacagacggacactTTTACCCGGACCAGGGAGGGTTAATCACAGCAGAACTTTTGGAGCAGGGGTGCAAATCCTGGTTCCTAATCTCTACAATAACAGGACTCCAGCTGACACGGACAGGGACTGAGACTGTGAATGTAAAGGCCATAAACGGTTAGTTACACTTCTAGGGTGTCTAGCAATCTTGTGCGTCTCCGTGTGTCTGGGGGACgcctggttttgtttgtttattcttgatTTTTAAGATTGAAACGGCGGCCAGTAAAATTGAGGTTAGTGTCGTCGACTCCGACAGCAGCCTAAACATGCGGGCGGGTAACGAGTGTCACCGAGTCTATATGTGGAGTTGTCGGTTTGCCATTCGTGCCCTAATCAGCATTTTCTTTGTGCGAACAACATTCGTCCTATTCCACCATCTAGTCCAAAGAGAGCCCGCGttgaccagagaattttgtttttcacttgccTGTAGTCGTGTCTCTAGTTCTTCTGGGAACACAGATGTTTTAGGCATTACTGTAGGGTCATATAAAtggaggaggacaaccccagTCTCACTCCTGACTGCTGCGTTCCTGAGCTCGTTATTATTTCCCTTCTACTGTACTTGTCTGTTGGGGTTGTCCGCACTCCGGAAGCTACCAGTATCATTACTACAAGTTTCATAAAACCTCCACACACCTGTGTCCCCACATGTGACCGTAAAGCAATAGCGTATCGATTCAAGCTGTGATTCATTGGTGTTTGAGCCTTATTGACTGAAGGCCAGGACTCATTGGGAATAACAAACCCTGGAAGAGACCCAGTCCTTTAGAAGCGTTTTAACTGCATGTGCAGATCTGTTATGGATCCAACGGttgaactattttatttttgtattattttagaatGAAGAATATCAGTCGTACACTTGGACCAGATTCAGTCCcgtttttgtttcattgctttTCTCAAGCGTGACTCATTCAGAGTCGCATGTTTTGTGAAACACACAGAATACCGGCTCTGAGAGACCGAACTGCGCTGCGATGCGACTCGTCTGTCTGGGACTGTGACTGTGCCGGGTGTCACGTcacaatcattaaaatatacagaatgaCGTATATAAACCTTTATACTATTCATTTGTGTCGTTTTTATTCACTGTTCATTTCATggttcaatatttgttttaatcggTGTTGTTTATCATAATTGATCCACTTTTTAAACATTCTTCATTTATGTCAGCATGCAGCCCTtctgttaatttgtttaacTGGATTCGGGAGGCGACCAGAGGAAATTCGGAAACAAATTGGCAGACTGCCGGGGATTTAACAAACAGTTTCAAAGTTTAGAGTCGGACTCACAGGCCTAATTGTATGTCTGTTGCACTTCTTACTCGGCAGTATTAAACACATGGGTTTCAAAAGGTCATGAGCTGAAAGAAACTAATTTAGTCACaaagattttatatttaaacaagaaGATGGAAAATTAGCTTTGATTTCTTACTattcacaaaaaaaatcaatgtgagGTATAATGTCTCGCTCGTTATCGCACAGATTTCCATGTCGGCCACCTCTCTTACTGACCTCAGATTAAACGTTTCTTTCTTCAGAGTATTGCTGTTCTGTTGCGTTGCTGTTGTATTGTCTAATCTCCACAATGCCTTATTTTCTGGGTGCCAAACAATGCAGTAAATGGGGTGTGTCTATGTTTTCTCCACGAATGTAActtggaaaatgaataataaataacaatatatctAAA

Function

symbol description
pdk4 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK4 (pyruvate dehydrogenase kinase 4).

NR:

description
PREDICTED: pyruvate dehydrogenase kinase, isozyme 4

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021539 True 2510 mRNA 0.45 2 20908817 20912002
TU108236 False 2500 lncRNA 0.45 2 20908817 20911992

Neighbor

gene id symbol gene type direction distance location
AMCG00021542 NA coding upstream 1031 20904388 ~ 20907786 (+)
AMCG00021540 NA coding upstream 10369 20890890 ~ 20898448 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding upstream 22036 20875123 ~ 20886781 (+)
AMCG00021536 NA coding upstream 66393 20829853 ~ 20842424 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding upstream 81526 20797698 ~ 20827291 (+)
AMCG00021544 dync1i1,LOC102799504 coding downstream 17802 20929804 ~ 20940208 (+)
AMCG00021543 dync1i1 coding downstream 45227 20957229 ~ 20980625 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding downstream 165943 21077945 ~ 21080685 (+)
AMCG00021555 NA coding downstream 268800 21180802 ~ 21192757 (+)
AMCG00021556 NA coding downstream 280960 21192962 ~ 21194602 (+)
G86727 NA non-coding upstream 5962 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 206360 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 288096 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 294452 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 361407 20508508 ~ 20547410 (+)
G86800 NA non-coding downstream 123100 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 260088 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 325099 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 383529 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 604031 21516033 ~ 21516243 (+)
G86688 NA other upstream 240890 20667470 ~ 20667927 (+)
G86601 NA other upstream 507568 20342610 ~ 20401249 (+)
G86616 NA other upstream 528393 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 537281 20368153 ~ 20371536 (+)
G86407 NA other upstream 1407575 19499800 ~ 19501242 (+)
AMCG00021550 NA other downstream 186417 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 246622 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 317850 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 323068 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 329664 21241666 ~ 21257189 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014984 pdk4 coding NC_007130.7 CM002903.2 41190258 ~ 41213718 (-)