AMCG00021540


Basic Information

Item Value
gene id AMCG00021540
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20890890 ~ 20898448 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021540
GTTTCAGAGGGCTACAGCAGCCCCCCACACAGCACCAAGCCCCCCGCCCCGGCCTGCCTGTCGCCTGTGGCCCTCTCTTTCGACTACCCAGTGGAGCGGCGGGAGGCCTGTCCGGCGCAGACGGGGCCCCTCTCCTGCACGGCCCCCGGAGGCTCCCCCGCCTCGTCCCCATCCCCATCCTGCGGCAGCGCCGAGACGTCCCCGCTGCACCGTGCCCAGCGCCCCGGAGACAACCAGGGAAGGGAAGACAAAAAGAAACCTTTTGGATTTTGGGTCACCAATGAGGCACAGCTCCGGCAAAGGGAAGAACGAGAAGGAGACCAGCCGAGCATCTTCAGGAAATGGGACGTCAACGAGGACCTGAGCCCGAGCAGCACCAGCTCCGCAGACGTTGGCGGCCCGGTCCAGGAGCCTGAGATGAAAGGACGCTGCCACACCCTGCTGCTGTCTTCGGACGAGATACTGGATGAAGGCCAGTCCCCCAGACACAACCAGTGGCAGAACCGCGCGGTGCTGGAGTGGAGCTGCCAGCAGGTGTCGCACTGGCTGATGGGGCTGAACCTGGAGCAGCACATCCCAGAGTTCAGCGCCCAGAGTGTCGACGGGGAGCGGCTGCTGCGCCTGGATGGCAACCAGCTGAAGTCGCTGGGCGTGGCTTCCTCCCAGGACCGAGCGCTCATCAAGAAGAAGCTGAAGGACCTACGGGCCATCATGGACAAGGCACGCAAGGCCCACGAGAAGCTGGAGAAGCACCGGGAGAAGCTGCGCAGGAAGGAGCAGTAGCAGGTGCTGCGGCAGGCCAGGAAGCCAGAGGGCGGCACGGCGTGACAAGGGGGCTTGGATACCGGCAGACCTGCTGAGACTCAAACACCTCGGAGCCAGGGACGGAGCTGGACTCGAAGAGATGAATGATAAAGAACCGAGCCCTAATGATCTGGACAGTCGTCAGAAACCCTGTGTAGGAGATTCCCAAGCGTTGCTTCTTTTGGAAACGAAATGCACTTCTAATCCCGTTAGTGTTTTTGTGTTCCCGACTTTGTGTTGTTTAACTGACGGTACTGAGCCGAACCAGAACTTCCCGGCATCGCAGCGCCGGTGATCCGTGTCTCTGTTACTCATTTATAATGATGAggttaaaaacagacaaacaaaaaccattATTAACAGGATTGTTGTGAtgtaaaccttaaaaaaatcCCCTCACTGATGGAGAAGAATCAGGCCTTGTGCTGGATTGCACTGAAATTAGGAGCAGAAGGCGTTTTTGGGGGGCTGCCTTGTGACTGAGCTAGCTGgattcccccccaaaaaacggGAATCCCAGGTTAGAATCAAGGCAGCGTCCCGTGAAGCAGCTGTGCCTCGGAGTGCGGCTGGgttgggctgggctggggggcGGTGATGTCACGGTGGAGACCCCCGGTGGTGCAGCCCGGCCCCCTGGTGTCCGTCCATAGATCCACACAGCGGGACGGAGAAACCATCTTCCCAGACTCAGGGGACAGGGACGTCCACACCACTCCACTCCAGCACAGCAGTCATCCATCACCCGCTGGGGTCCGAAAAAGGGGCTACCGATTGATTGACAAGTCTCTTATCtacagttgtttttaatttgtatttattagttattttatattttgtggagAGGGGCTTTCAGTGCTTTTGTCCAGACTGAGTCTATACCGGGTCGCTGCGATGGGGGGTGACACCCACGCTGAACGATGGAGTCTGACGGAAGAGACGTGTGGTTTGGTTCTGATTCTGGTTCTGGTTTGGCTATTCTGTGAATCCTCCTGTCTGAGTCTGTAACCCCGACAGAGCACAGTCAGAGGGACGAGGAGATGATCTGGCCATCGCTGTAAACATTTCATCACCCCCGAAAAGGAGTATAATTATTTATGATTcatatgaaatgcaaattatagtattatagagttttaaatattttacatttatattttattatgtctGTGTACAATTTTACATTCTGGACATATCATGTCTGGTGTCCTGAGGGATTTATTTCCAGTGTCCATCCATTCCCCTGTTGAGAGAGACCGGCAATTGTATAACGTGTGGATTTGTGATCTGATTTTAAAACGGCCTGGCTGtgttcagtatttttcttttgtttctgcacaaactgcCTCACCGGCTTCATCcctgtctgttttatttgtgtttatttgtgatgGCTGTCTTCAAACTGAAGCCATTTGAATTATGCTTGATTTCGCTGGGAGGCTCAGGCCATCGCAGGGCCGCCACGTTTCTGAACACTTTCACGGTTTTAACCAAAGGTACGGCATCGCCTGCTGAGACGGTGCAAAAAGTGCTCAGTACTGTGGAGAGGCTTGGAGACCAACCCTcaccaaacaaatcaaaacagttCGGTGAGGTCCGTCCACAGCTGCCCGTACAAACGCGTTGTTTCATTTCTTGCTTTATCATCGGTACCAAAAGCAGATCGAAAGTCACCCAGATCCAGACGATGGAAGAGAAGAAACTGCTTCTGGAAGAGGGACtttaatacagtattactgCCCGGACGCACAAAAGACCGCCCTCCCGTCTGGACTGACACCAAGAGACACTACCTGTGTGTGACGCTGTCGGGCTGAACTCTGTGTCACACCTGAGCAGGAGCTACTAAATCAGTTCCTTCCATAATATAGTAGTTGTGTACAAAGAAACGTGAggtattttgtgtgttgtgcatCTGATAATCAATGGGATGAATTGACAGAATGAGGTGCTTTTGCAATTGAATTTGATTGCATTTTGAATAGTGTTCTGTTTGTAATGTTATACAGTATATGGTCAGACGCCAGTGTTCGCAATAACACAAATGTAGCCTTTGTGTATCAGAAAATAGTGTAGAAACCAATCAAATTTGTTGATTCGATTGTGCGACTGAGATAACGTGTATACATTCACTGTCCAGACACTGACAAACagactttaaatattttgatatacGAGTGCACAAGGCAATTCTGGACACTGTGGATTCATGGGACCTTTCAGAGGTCGAATGCAAGGGAAAGGAAGGAAAGGGTTTCTAATGAAAGGCGCTTAACAAAGCAGAAGGCTCGGTTATGCAGATTTACAGAGATGTGTAAAGTGTTGGGAgacaatactgtatttttgaTAATGAATAGTGTTGATGCAAAAAAGCAATACACTGCTGCGAAGCCCTGTTGTGCGGTTATATCCTAAATCTATGGTTCAGTGCATATAATATGGAGGTGAGCTAAACATGTTAACTTTCGCAAACTCACAATAGAGGTGTCCTAATAGGATTTTAACTGCAAACACAGTGCGATAGTCTGCCGTTTTTTTTACATCGCAGATCTAGTTTCCCCCACTTACTACTGAGAAAGAAAGGCAGCTAACAAAGGGTTTGTCTGAACATGCTTTGAGTCACTTCATTAAGCAGTAGCGTGTTAGCCTGTAGACGACAAATCCGTTCCGAAAAGACGTCGAGCGAAAGGCACGTGGAAAGGTAAAGCATCGATTTGTACATTTTCGCAGTTTGTATTTGCATGAAGGAAAAGCTTCATCTCTGCTCatattcctcctcctcctgcgtGGGGAGTGCGATTCCCTCTTTTATGATATCAAGGTGTGGCGAAAGTGGCTTGTTTACGTCCCTCTGCTCCTCTGTAAATAAACCTCCTGCCAATGAGTGACCTGTCGCAGAAACACAGTCATTTGAGTTCATCCAAGAGAAAAGGTTTTCCGCATTTTTATACAGAAAGGGTTGTAGTCCCATGCTTGTATGAGAAATGTACGGATAAAGGTGAGCCATTGTTTATAAATACCACCCCTTATCCCCTTTGAATTCCTGTATTTACAGCAGAAACTTGTTCAGCTTTCTCCTGGGTTGATCTGACGTTGACCTGGCCATGACTTTTCTCGCTGCCAGATGGTTGACAAGTGACATCTGACGGGTTACACAGTTCTCAGTGCATTATTACGTCAGTCACCATATTGACTGTGCACCACTCTCATGTAACGGAAGTATTATTCATATCCACTACTTTTGTGCAGAAGTTGTGAAGATTTAATCCAACactcaaataaaatcaatcacaaGATGAACTCGGCGCTGCTTTTGATTATCGccttaatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021540 True 4141 mRNA 0.49 6 20890890 20898448

Neighbor

gene id symbol gene type direction distance location
AMCG00021541 ppp1r9a,LOC107722146 coding upstream 4109 20875123 ~ 20886781 (+)
AMCG00021536 NA coding upstream 48466 20829853 ~ 20842424 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding upstream 63599 20797698 ~ 20827291 (+)
AMCG00021535 NA coding upstream 108717 20734714 ~ 20782173 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding upstream 169626 20703104 ~ 20721264 (+)
AMCG00021542 NA coding downstream 5940 20904388 ~ 20907786 (+)
AMCG00021544 dync1i1,LOC102799504 coding downstream 31356 20929804 ~ 20940208 (+)
AMCG00021543 dync1i1 coding downstream 58781 20957229 ~ 20980625 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding downstream 179497 21077945 ~ 21080685 (+)
AMCG00021555 NA coding downstream 282354 21180802 ~ 21192757 (+)
G86695 LOC103362787 non-coding upstream 188433 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 270169 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 276525 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 343480 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 389587 20500786 ~ 20501303 (+)
G86727 NA non-coding downstream 2579 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 136654 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 273642 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 338653 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 397083 21295531 ~ 21297780 (+)
G86688 NA other upstream 222963 20667470 ~ 20667927 (+)
G86601 NA other upstream 489641 20342610 ~ 20401249 (+)
G86616 NA other upstream 510466 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 519354 20368153 ~ 20371536 (+)
G86407 NA other upstream 1389648 19499800 ~ 19501242 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 10369 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 199971 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 260176 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 331404 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 336622 21235070 ~ 21236080 (+)

Expression


Co-expression Network