AMCG00021541 (ppp1r9a,LOC107722146)


Basic Information

Item Value
gene id AMCG00021541
gene name ppp1r9a,LOC107722146
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20875123 ~ 20886781 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021541
atgATCGGTGCCCTGACCCTGCTTGTGTTTCACACTTACTCCGACGAAGACTATGACCGGAGGAATGAGGAGGTGGACCCTGTCGCCGCCTCGGCCGAGTACGAGCTGGAGAAGCGCGTGGAAAAGCTGGACCTTTTCCCTGTGGAGCTGGAGAAAGATGAGGATGGCCTCGGGATCAGCATCATCGGGATGGGTGTCGGGGCAGACGTGGGTTTGGAGAAGCTCGGCATCTTCGTCAAGACCGTCATCGAAGGGGGAGCCGCGGAGAGGGATGGCAGAATCAAGGTTAACGACCAGATCGTGGAGGTGGATGGCACCAGCCTGGTGGGAGTCACCCAGAACTTTGCCGCTGCCGTCCTCAGGAACACGAAGGGCACAGTCAGGTTCGTGATTGGCCGGGAGAAGCCGGGCCAAGTCAGTGAGGTGGCGCAGCTCATCAGCCAGACCCTGGAGCAGGAGCGGCGCCAGCGGGAGATGATGGAGCAGCACTACGCCCAGTACGACGCGGACGACGACGAGACGGGGGAATACGCCACAGACGAGGAGGACGCCGCGGGGCCGGACCTGCCGGGCAGGGACATGGCCATCGAGGTCTTCGACTTACCCGAGACAGAGGACATATTCTCCCCCACAGACATTGACACCGCCAAGCTCTCGCACAAATTCAGAGAGTTGCAAATAAAGCACGCTGTCACTGAAGCAGAAATACAGAAGCTCAAAAGCAAgTTGCAGTCTGCGGAGAGCGAGAAGGGCggctgggagagggagaagacCCAGCTGCAGAGGAGCATAGAGGACAACAAGGAGAGGATGCTGAAGCTGGAGAGCTACTGGATCGAGGCGCAGTCTCTGTGCCACACGGTAAACGAGCACCTCAAGGAGACGCAGAGCCAGTACCAGGTGCTGGAGAAGAAGTACAACAAGGCCAAGAAGCTCATCAAGGACTTCCAGCAAAAGGAGCTCGATTTCGTCAAGCGAGAGGAAGCCGAAAGGAGGAAGTTCGAAGATAAAGAGAAAGCACATCTGATGGAAATCCAAGGCCTGCAAGCCCGGGTATGTATCTGTGAAAAGTTGAGAGTTGCCACTGAGGACGGGGGTGTTGTCTTCGTG

Function

symbol description
ppp1r9a Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization; calcium-mediated signaling; and neuron projection development. Predicted to act upstream of or within nervous system development. Predicted to be active in several cellular components, including actin cytoskeleton; dendrite; and postsynaptic density. Orthologous to human PPP1R9A (protein phosphatase 1 regulatory subunit 9A).

NR:

description
PREDICTED: neurabin-1 isoform X3

GO: NA

KEGG:

id description
K17551 PPP1R9; neurabin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021541 True 1110 mRNA 0.58 9 20875123 20886781

Neighbor

gene id symbol gene type direction distance location
AMCG00021536 NA coding upstream 32699 20829853 ~ 20842424 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding upstream 47832 20797698 ~ 20827291 (+)
AMCG00021535 NA coding upstream 92950 20734714 ~ 20782173 (+)
AMCG00021532 LOC103394147,LOC106952338,LOC107383304,LOC107085850 coding upstream 153859 20703104 ~ 20721264 (+)
AMCG00021528 vps50 coding upstream 285827 20577693 ~ 20589296 (+)
AMCG00021540 NA coding downstream 4109 20890890 ~ 20898448 (+)
AMCG00021542 NA coding downstream 17607 20904388 ~ 20907786 (+)
AMCG00021544 dync1i1,LOC102799504 coding downstream 43023 20929804 ~ 20940208 (+)
AMCG00021543 dync1i1 coding downstream 70448 20957229 ~ 20980625 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding downstream 191164 21077945 ~ 21080685 (+)
G86695 LOC103362787 non-coding upstream 172666 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 254402 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 260758 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 327713 20508508 ~ 20547410 (+)
G86665 NA non-coding upstream 373820 20500786 ~ 20501303 (+)
G86727 NA non-coding downstream 14246 20901027 ~ 20902855 (+)
G86800 NA non-coding downstream 148321 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 285309 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 350320 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 408750 21295531 ~ 21297780 (+)
G86688 NA other upstream 207196 20667470 ~ 20667927 (+)
G86601 NA other upstream 473874 20342610 ~ 20401249 (+)
G86616 NA other upstream 494699 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 503587 20368153 ~ 20371536 (+)
G86407 NA other upstream 1373881 19499800 ~ 19501242 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 22036 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 211638 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 271843 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 343071 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 348289 21235070 ~ 21236080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02439354_02469735 PPP1R9A coding CI01000054 null 2439354 ~ 2469735 (-)