AMCG00021542


Basic Information

Item Value
gene id AMCG00021542
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20904388 ~ 20907786 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021542
CTGCGCTGGAGAAGACCCTCAACACAGAGACGCGCTGCGCGGGGGGATGTCGTCAGTGGTCGGTGGGTAGAAATGGAGGAGCCGGGCACCAGATCCGCAGTGGCTAGGGTCCTGAAGGAGAGCTTCTTGCAGGCTCTGCAATGCAATGATTTTGAGAAAGTGCGAGACATCCTGCAGAACAGCGCCGTAGACATCAACACTGTGTTTGAGGTGGAAGATAAAAATATGATTCTGGCCTCGTATAAGCAAGGCTACTGGTTGCCCGGGTACAAACTGGAGTCCTCCTGGGCCACCGGCCTCCACCTGTGTGTGATGTACGGCTTCGTGGAGACGGCCCTGTTGCTCCTGGAACACAAGGCCTCGCTCAACGGGAAGCCCAACGGGAAGACGCCCCTGCACGTGGCCTGTGAAGTTTCTAACAGCGACTGTGTTGCTGTCCTCCTGAGTCACGGAGCGAGAGTCAACAGCATCTCCCTGAGCGGACACGCGCCGCTGCATTACTGCATCACCAAGGCGTCCGTGGATTGTGCCAAGCAGCTCATCCTGAAAGGGGCGGACCTGAGCAAACAGAGCGACAACGTGGACGGGGACACGCCTCTGCACACAGCTGCCCGCTTTGGCGTCCCGGAGCTCACCGCGCTGTACCTCACCCATGGCGCCCGGGTGGATGAGGTGAACGCCCACACAGAGACGCCGCTGATCACCGCGGCCTTCTGGGCACTCAACTTCCGGGAGCAGGAGTACAGCGCGGACCACCACCTGGTCTGCCGCCTGCTGCTGGACAGCCGGGCCAACGTCAACCTGCAGGAGCAGGACCTGAAGACGGCGCTGCACAAGGCGGCCTGGAACTGTGACCACGTGCTCATGGAGATGCTGCTGGAGGCGGGGGCGGACTCCCGGGTCATGGACATCAATGGCTGCGCTCCCATACAGTACCTCATCAAGGTGACGTCGGTGCGCCCGGCCGCCGTGCCTGAGATCTGCTTCCAGCTGCTGCTGAACCATGGAGCGGCCAGGATCTACCCCCCACAGTTCCACAAGGTACTGCAGGCCTGCCATGAGTGCCCTAGGGCAATAGAAGTCATGATCAATTCATACGAGCACATCAAAGCCACCGACAAATGGAGAAGAGCCATTCCTGACACGGTCTACCAGCAGCACCAGGTGTTCTACGAGTCCGTGTTCACCGTGTGCCGCAGAACCCCCCGCGCTCTGATGCACCTGGCCCGGTGTGCCATTCGGGCTGCGATGCTGATGCGATGCCACCAGGGGGTCAGAAAACTGTCGCTGCCGCCGTCACTCGAGAGGTATCTACTGCTGGAGCCCGAAGGCATCCTTTACTGATCGTCCCATTATAAGTTTACGAGGTCTCCACAGAGAGAAGGTCCCACTCTTGGTCTCCACTTGTACCCTTTGGAAAGATTTTCCCTGGACAGACAGTCCATCCAAGGAACAGTGATATGAGTGACATGTCCTAAAAGACACAGAGGGGGGAGTTCAAGACATGCCTTAGGAACTGAAATGGTATAAGTCAATAAATCTACATTAGTTCAAGAGAAACCGGGTAAGAGATGAGAATCCCTGACAATGAGAAAAGAACGGGACGTTGGTACACTGGTGTGTGACAACCTCATGTGGATATTTCACAGTATTATACAAGGATGAATCtct

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10326 ASB4; ankyrin repeat and SOCS box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021542 True 1671 mRNA 0.57 5 20904388 20907786

Neighbor

gene id symbol gene type direction distance location
AMCG00021540 NA coding upstream 5940 20890890 ~ 20898448 (+)
AMCG00021541 ppp1r9a,LOC107722146 coding upstream 17607 20875123 ~ 20886781 (+)
AMCG00021536 NA coding upstream 61964 20829853 ~ 20842424 (+)
AMCG00021537 col1a2,LOC107722140,LOC107667770,LOC107591591,LOC107731699 coding upstream 77097 20797698 ~ 20827291 (+)
AMCG00021535 NA coding upstream 122215 20734714 ~ 20782173 (+)
AMCG00021544 dync1i1,LOC102799504 coding downstream 22018 20929804 ~ 20940208 (+)
AMCG00021543 dync1i1 coding downstream 49443 20957229 ~ 20980625 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding downstream 170159 21077945 ~ 21080685 (+)
AMCG00021555 NA coding downstream 273016 21180802 ~ 21192757 (+)
AMCG00021556 NA coding downstream 285176 21192962 ~ 21194602 (+)
G86727 NA non-coding upstream 1533 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 201931 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 283667 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 290023 20612626 ~ 20614365 (+)
G86668 NA non-coding upstream 356978 20508508 ~ 20547410 (+)
G86800 NA non-coding downstream 127316 21035102 ~ 21038425 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 264304 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 329315 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 387745 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 608247 21516033 ~ 21516243 (+)
G86688 NA other upstream 236461 20667470 ~ 20667927 (+)
G86601 NA other upstream 503139 20342610 ~ 20401249 (+)
G86616 NA other upstream 523964 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 532852 20368153 ~ 20371536 (+)
G86407 NA other upstream 1403146 19499800 ~ 19501242 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 1031 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 190633 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 250838 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 322066 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 327284 21235070 ~ 21236080 (+)

Expression


Co-expression Network