AMCG00021546


Basic Information

Item Value
gene id AMCG00021546
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20916683 ~ 20926715 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021546
ATGTTTCTGAATAAGCCCCGCCCTCCCCGTCCTACTCCAGTCTGCTCTGTGCGGCAATTGGCTCCGGCGAGTGTCAATCACCTCCTGCTCGACGACAACAACAAGCCCTTCGGACGTCCTCACGCCCCGGGGGCCGACGCTGCCAAACGACTCGCCCGGAGGTGCTGCGACCGGACCGGCGGCAGGACGTTCCCCAGAAGACCGATCCCAACGCCGACCCCTCGCAGATACAGCGGCAATGCGCATTTGATCgaccaggaccaggaccaggactcCTCTCTCTGCGGGCTTTGCCGGGCCGGTCCAGGGGGCAGGGCGGCGCACAGAGGACGCCCGTGTGCTGGTGCTTCAGTCCGCGGCTCCAGCATGAAGTTCGCCCAGATCCTGCTGAAGAGCGTCCCCGGGCAGGTCGAGCGCTTCTCCCGCTACTCCCCGTCGCCGCTGTCGATGAAGCAGTTCCTGGACTTCGGATCCTCCAACGCCTGCGAGAAGACCTCGTTTGTGTTTCTGAGACAGGAGCTTCCTGTCAGGCTGGCCAATATCATGAAGGAGATCGACTTTCTTCCTGACAAGCTCTTGAGCACCCCGTCTCTGCAGCTGCTACAGAGCTGTTTCACAGAAGCACTGATCAACATCAGGAACCGGCACAACAATGTGGTGCCCACCATGGCTCAGGGGGTGGTCGAGTATAAGGAGGCCTTTGGCGTCGACCCGGTGACCAATCAGAACGTCCAGTACTTCCTTGACCGGTTCTACATGAGCCGCATCTCCACCCGGATGCTCATGAATCAACACACTCTTATATTTCACGGAAGTACGAACCCGGCCCACCCCAAGCACATAGGCAGCATCGATCCCAACTGTGACGTGGTGGAGGTGGTGAAAGaTGCGTGCGAGAGCTCCAGGATGCTCTGCGACCAGTATTACCTCATGTCTCCTGAAGTGGAGATCAAACAGATGAACGCCAAAGCCCCCGATCAGCCTCTACACCTAGTTTACGTGCCCTCGCATCTCTACCACATGCTGTTCGAGCTCTTCAAGAACGCCATGAGGGCGACCGTGGAGACGCACGAGTCCAGCCCGTCCCTCCCTCCCATCAAGGTGATGGTCTCCCTGGGCAGCGAAGACCTGACCATAAAGATGGCCGACCGGGGGGGCGGCGTTCCCCTGAGGAAGATCGACCGGCTCTTCAGCTACATGTACTCGACAGCCCCCAGTCCG

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021546 True 1221 mRNA 0.60 8 20916683 20926715

Neighbor

gene id symbol gene type direction distance location
AMCG00021545 NA coding downstream 13918 20899071 ~ 20902765 (-)
AMCG00021538 sgce coding downstream 60909 20843663 ~ 20855774 (-)
AMCG00021533 NA coding downstream 223459 20689347 ~ 20693224 (-)
AMCG00021531 calcr coding downstream 277727 20618070 ~ 20638956 (-)
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding downstream 456405 20444543 ~ 20460278 (-)
AMCG00021549 NA coding upstream 56885 20983600 ~ 21020401 (-)
AMCG00021548 NA coding upstream 108148 21034863 ~ 21038425 (-)
AMCG00021552 dlx5,LOC106570474 coding upstream 160160 21086875 ~ 21094522 (-)
AMCG00021553 NA coding upstream 183039 21109754 ~ 21140683 (-)
AMCG00021554 asns,LOC107568288 coding upstream 239866 21166581 ~ 21175350 (-)
G86739 col1a2,LOC106570460 non-coding downstream 62389 20824022 ~ 20854294 (-)
G86740 NA non-coding downstream 85761 20828259 ~ 20830922 (-)
G86738 NA non-coding downstream 92719 20823000 ~ 20823964 (-)
G86736 NA non-coding downstream 94080 20821632 ~ 20822603 (-)
G86689 NA non-coding downstream 302575 20612663 ~ 20614108 (-)
G86848 NA non-coding upstream 248991 21175706 ~ 21184318 (-)
G86849 NA non-coding upstream 260053 21186768 ~ 21188838 (-)
G86850 NA non-coding upstream 263124 21189839 ~ 21190932 (-)
G86881 NA non-coding upstream 364658 21291373 ~ 21293903 (-)
G86893 NA non-coding upstream 589317 21516032 ~ 21516234 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 191803 20721884 ~ 20724880 (-)
G86649 NA other downstream 518900 20395612 ~ 20397783 (-)
G86640 NA other downstream 556428 20358301 ~ 20360255 (-)
G86600 NA other downstream 581379 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 631704 20281152 ~ 20284979 (-)
G86808 NA other upstream 137143 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 739687 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2228472 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2402610 23329325 ~ 23332968 (-)
G87263 NA other upstream 2411536 23338251 ~ 23338484 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02417068_02430580 PDK4 coding CI01000054 null 2417068 ~ 2431316 (+)