AMCG00021548


Basic Information

Item Value
gene id AMCG00021548
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21034863 ~ 21038425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021548
CCCAGTTCCACCAGAGCAAGTCACCGTCGGATCTGCGCTTGCGCGGGAGGACCGCCTCATAACCTCCAGTATCCCGTCAGCCCCTAGACCTGAACAGCAGCAGCGCTTCGGATGTCTGAGGTAAAGAAGCCAGAAATCATGTCCGAGAAGAAGCAGACGGTGGATTTGGGATTACTAGAGGAGGACGACGAGTTTGAGGAGTTTCCAGCGGAAGACTGGACCGGCCTGGACGAAGACGAAGACGCACACGTGTGGGAGGACAACTGGGACGATGACAACGTAGAGGACGACTTCTCGAACCAGCTCAGAGCTGAACTAGAAAAACACGGCTACAAAATGGAGACCTCGTAGTCTTCAGCTGCCCACTGAGACTTAACTTATATATAAGACTTTCACAGGATTGGGAATGGTGTCCTGTTGCCACACGTTGAAGACCGAAGATATTAAGCATCCATGTTGTTGACCAatactgcagttttgttttcttttttttgtaaaaaaaaataaaaaattaagaattaaaaatgggaaaatacaGAATTTGACATTTCTTGGAAAACCGCCTGTTGTATTGAGGGTTTGGTTGATAAActgtctatatgtatatattgtttatttacaaagtcTGTGGTCAAACGTGCTCTTTAGTGGTGAAGTTGGAATTCAGTGTTTAATTAAGGATTAAGTCTAACAATTTGGGAAAGATGGGTCTTTGAAATGGGCACGATCTCCTACGAGtcataattatctttttttttttattagttctCCC

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K10881 SHFM1, DSS1, RPN15; 26 proteasome complex subunit DSS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021548 True 772 mRNA 0.43 3 21034863 21038425

Neighbor

gene id symbol gene type direction distance location
AMCG00021549 NA coding downstream 14462 20983600 ~ 21020401 (-)
AMCG00021546 NA coding downstream 108148 20916683 ~ 20926715 (-)
AMCG00021545 NA coding downstream 132098 20899071 ~ 20902765 (-)
AMCG00021538 sgce coding downstream 179089 20843663 ~ 20855774 (-)
AMCG00021533 NA coding downstream 341639 20689347 ~ 20693224 (-)
AMCG00021552 dlx5,LOC106570474 coding upstream 48450 21086875 ~ 21094522 (-)
AMCG00021553 NA coding upstream 71329 21109754 ~ 21140683 (-)
AMCG00021554 asns,LOC107568288 coding upstream 128156 21166581 ~ 21175350 (-)
AMCG00021557 NA coding upstream 157170 21195595 ~ 21205945 (-)
AMCG00021562 NA coding upstream 169271 21207696 ~ 21227807 (-)
G86739 col1a2,LOC106570460 non-coding downstream 180569 20824022 ~ 20854294 (-)
G86740 NA non-coding downstream 203941 20828259 ~ 20830922 (-)
G86738 NA non-coding downstream 210899 20823000 ~ 20823964 (-)
G86736 NA non-coding downstream 212260 20821632 ~ 20822603 (-)
G86689 NA non-coding downstream 420755 20612663 ~ 20614108 (-)
G86848 NA non-coding upstream 137281 21175706 ~ 21184318 (-)
G86849 NA non-coding upstream 148343 21186768 ~ 21188838 (-)
G86850 NA non-coding upstream 151414 21189839 ~ 21190932 (-)
G86881 NA non-coding upstream 252948 21291373 ~ 21293903 (-)
G86893 NA non-coding upstream 477607 21516032 ~ 21516234 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 309983 20721884 ~ 20724880 (-)
G86649 NA other downstream 637080 20395612 ~ 20397783 (-)
G86640 NA other downstream 674608 20358301 ~ 20360255 (-)
G86600 NA other downstream 699559 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 749884 20281152 ~ 20284979 (-)
G86808 NA other upstream 25433 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 627977 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2116762 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2290900 23329325 ~ 23332968 (-)
G87263 NA other upstream 2299826 23338251 ~ 23338484 (-)

Expression


Co-expression Network