AMCG00021549


Basic Information

Item Value
gene id AMCG00021549
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20983600 ~ 21020401 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021549
ATGGCCGCGAAGACCAGGGTTGTAATTGTGCGGCTGGAGAAGAGGGAGGAGCGCACATGTCCTCCTCCAGCCCGGGGACGGGGACGTggacggggacggggacgggATGCCGTCCCGGTGGTTTTACCCAAGAGAGCTGACCCAGCTGAGCTGAAGTCGATTTTCCTAAAGTATGCAAGCATTCAGAAGAACGGGGACCACTTCATGTGTCCCGAAGACTTCGTCTCTCGGTTCCTGCTCGCGCACACGGGCATCCGGCTGACGGAGAAGTCGGTGGAGCTCCTGGCTGGAGTTGTGGACCAGACAAAGGATGGgATGATTTCCTTCCAGGAGTTCCTGGCCTTCGAGTCGGTTCTGTGCGCGCCGGACGCCCTTTTTCTGGTGGCTTTCCAGCTGTTCGACAAGACCGGCACGGGGGAGACCACTTTTGAGGATGTCAAGCAGGTTTTCAGCCAGACCACGATTCATCAGCACATTCCCTTCAACTGGAATTCGGAGTTTATACAGCTGCATTTTGGCAAGGACCGCAAGAAGCGCCTGACATACGCGGAGTTCACGCAGTTTCTCCTGGAGATGCAGCTCGAACATGCCAGGCAGGCGTTCGTGCAGCGGGACCGAGCCAAGACTGGCACCATCACGGCGCTGGACTTCAACGACATTATGGTCACCATTCGACCGCACATATTGACGCCGTTTGTAGAAGAATGTCTCGTCGCTGCGGCCGGTGGAGCCACTTCGCACCAGGTCAGCTTCTCCTACTTCAATGGGTTCAATTCTCTGCTCAACAACATGGAGCTCATTAGGAAGATCTACACCACTCTGGCGGGCAGCAGGAGAGACGTGGAAGTCACTAAAGAGGAGTTTATTCTGGCGGCCCAGAGGTTTGGCCAAGTCACCCCCATGGAGGTGGACATCCTGTTCCAGCTGGCGGACCTGTCGGAGCCACGGGGGCGGGTCGGATTAGCAGACATCGAGCGAGTCGCACCGCTGGAGGAAGGGGCTCTCCCGTACAACCTGGCCGAGGCTCAGAGACAGttttcttccccggtccttctctctccccagcAGTCCTCCGGTGACCTGTCTCGGCCCGTACTCGTCCAGCTAGCGGAGTCTGCCTACAGGTTCTCTCTTGGCTCGCTGGCTGGAGCGGTCGGTGCCACCGCGGTGTACCCCATCGACCTGGTGAAGACCCGCATGCAGAACCAGCGCGCCAGCGGCTCCTTGGTGGGGGAGCTGATGTACAAGAGCAGCTTTGACTGCTTCCGCAAGGTCCTGCGCTACGAGGGCTTCTTCGGCCTGTACAGAGGTCTCCTGCCGCAGCTGCTGGGTGTGGCCCCAGAGAAGGCCATAAAACTCACAGTGAATGACTTTGTGAGAGGGAAGTGTATGCAGAAGGATGGCTCTGTCCCCCGTCTGGCGGAGGTGCTCTCCGGGGCGTGCGTCCTCATAGAACCGATCGATGTGTCATTTACGCTGCGTCGGCCATGTTCGAATCTCAGACAGGTGGAGAAGCGTCAGTCAGTGTGTAAAAGTGCCGGAGCCTCCCAAGTGGTCTTCACAAACCCCCTGGAGATCGTGAAGATCCGACTGCAGGTGGCAGGAGAGATCACGACGGGCCCCCGGGTCAGCGCGCTGTCGGTCATCAGGGACCTGGGTTTCTTCGGCCTCTATAAGTGTTGTGGTTTTGTTCCCTGGCAAGGGCTTCTGTTGCCTCATTTTGCAAACATGAGAAGTGTAAATGGTTACAATAATCACCCCTCTCTCCATGACCCTCCAGGTATGCCCGCAGCCTCCTTAGTGACACCGGCTGATGTTATCAAGACACGGCTACAAGTGGCGGCTCGTGCCGGCCAGACGACGTACAATGGGGTCATTGACTGCTTCTGGAAGATCCTGAGAGAGGAGGGACCCCGCGCCTTCTGGAAGGGAGCAGGAGCACGAGTCTGCAGGTCGTCCCCCCAGTTCGGCGTCACTCTCCTGACCTACGAGCTCCTCCAGAGATGGTTCTATATTGACTTCGGAGGACAGAAACCCACCGGCGCTGAACCCCGGCCCATGTCTCGGATCAGCCTGCCGGCACCCAACCCGGACCACACGGGGGGGTTCAAGCTGGCTCTGGCCACCTTCGCGGGGGTCGAGAGTAAATTCGGACTTCAGTTGCCGCGGTTCAGTGCAGGGGTCCACGTGTCTCCGGCGTCGCCCTGA

Function

GO: NA

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021549 True 2208 mRNA 0.59 20 20983600 21020401

Neighbor

gene id symbol gene type direction distance location
AMCG00021546 NA coding downstream 56885 20916683 ~ 20926715 (-)
AMCG00021545 NA coding downstream 80835 20899071 ~ 20902765 (-)
AMCG00021538 sgce coding downstream 127826 20843663 ~ 20855774 (-)
AMCG00021533 NA coding downstream 290376 20689347 ~ 20693224 (-)
AMCG00021531 calcr coding downstream 344644 20618070 ~ 20638956 (-)
AMCG00021548 NA coding upstream 14462 21034863 ~ 21038425 (-)
AMCG00021552 dlx5,LOC106570474 coding upstream 66474 21086875 ~ 21094522 (-)
AMCG00021553 NA coding upstream 89353 21109754 ~ 21140683 (-)
AMCG00021554 asns,LOC107568288 coding upstream 146180 21166581 ~ 21175350 (-)
AMCG00021557 NA coding upstream 175194 21195595 ~ 21205945 (-)
G86739 col1a2,LOC106570460 non-coding downstream 129306 20824022 ~ 20854294 (-)
G86740 NA non-coding downstream 152678 20828259 ~ 20830922 (-)
G86738 NA non-coding downstream 159636 20823000 ~ 20823964 (-)
G86736 NA non-coding downstream 160997 20821632 ~ 20822603 (-)
G86689 NA non-coding downstream 369492 20612663 ~ 20614108 (-)
G86848 NA non-coding upstream 155305 21175706 ~ 21184318 (-)
G86849 NA non-coding upstream 166367 21186768 ~ 21188838 (-)
G86850 NA non-coding upstream 169438 21189839 ~ 21190932 (-)
G86881 NA non-coding upstream 270972 21291373 ~ 21293903 (-)
G86893 NA non-coding upstream 495631 21516032 ~ 21516234 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 258720 20721884 ~ 20724880 (-)
G86649 NA other downstream 585817 20395612 ~ 20397783 (-)
G86640 NA other downstream 623345 20358301 ~ 20360255 (-)
G86600 NA other downstream 648296 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 698621 20281152 ~ 20284979 (-)
G86808 NA other upstream 43457 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 646001 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2134786 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2308924 23329325 ~ 23332968 (-)
G87263 NA other upstream 2317850 23338251 ~ 23338484 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01029807_00003199_00006276 SLC25A13 coding CI01029807 null 3097 ~ 6276 (-)