AMCG00021550


Basic Information

Item Value
gene id AMCG00021550
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21098419 ~ 21109368 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021550
caacaacgcaacatttcaatattttttcgCGCCGTGGGTAGGCAACACCAACACCAGCACTAATCCTGAATAACCGGCTGCTGGCGTTTCTCGCCGGTGCTGTTACAATGTTGCACCGCTTTGGCTGTGGCGCAGCTGCGCAGTGACGCGCTCGTGTGTTGCCGGCGATCACAGTGCGCTGCAGCCGGGGAAGGTCATGTCCGGCCCGGCCCATGTGTCCAGAGTGCGGCTCCTGTACAAGCGCATCCTGCTGCTGCACCGCTTCCTGCCGCTGGACCTGCGGGCGCTGGGGGACCAGTACGTGCGGGACGAGTTCAGGCGGACCCGGGGGGCCACAGCGGAGGAGGCCCGGGGCTTCCTGGCGGAGTGGGAGGCCTACaagaacacactgcacacccaGGTGATGGAGTCTGTGACGAAGAAAACCGAGGGAATTCGCTTTGGAACCGATCTTTCCGGGGAAAAACTCGCCCAGTTTCAAGACTCCCAGATTGGACAGCTGTATGAGCTGATGCAGGAGGCAACGAAACCCAACCGGCAGTTCAGCTTTCAGGACGACCACCTTCCCAAGTAGAGGCTGACACGGCTGTCACTCTGGAGCGAAGGCTTGCCGGTTTGAAACGTGTTGTGGTGCAGTACTTGAGTTCCTGTTCCTGTTAATTGCAGCCATTAAGATATGCCATTACATTAAAGTACTCTGAGAGGCTGTTGAAACACAAATGAGTCTTCTGGATTACTTTTCTTACCAAGTTAttgtagaaaaagaaaaaaagagccCTTGTGGTCAAACTTAAGACAAGGAAATGTTTCACTTTGCAGCCATCATCTCGTGACTCGAGTGATCTCACCGCCGTGTGTGGTTGAGTGTTGAGACGTCAGTCCTCTCAGAGAGTGAATGGTACTTGTGTTCATGTCAGCCCATTAGTTCTGTCCAACACAACCCTCCATCACAAACTTCCAATATTTTTCCCAGAAGTTTAGAAACTCTCGCAACTATGGCTGCTAATCATGTTTTAATCAGAAACATTGTAGGTtgctaaaaagaaaagaaaaaggtgcCCTGCCTTAATCTGCAAGAGAAAGTACTACTTACACCACAACACCGATCTACTGAAGGCATCCATGTCATACCAGCTGGTGATCCTGGCATcgtttgtattttactttgttgCAATATTTTTAATCAGAAACACTCCACGATGAAGCCTACAGTTCCATGTGTGCAGCTTCCGAGCGCTGTGAAGTCAGAAAAGATGCATCTCCCCTGGGTCTGTTATCAGTATTGCTCAATTAGGGGGTGGGAGATGACCTTTGACTTCCTGGTGGTCAGTTCAGAACCTTCCAATGTGTCACCTGACCCATCACACAGATGTCTCTCTTCGGGAAAGCATGCTTCAAGAGCGCATCTCATTCAGCATGAAGGAGATTGTGGTTTTGCATATTGTTGCCCTGGGGGGTAAGAGTGTTTGCTaaggattaataataatgtgaatggtgatattattattattattattat
>TU108358
TCGCCGGTGCTGTTACAATGTTGCACCGCTTTGGCTGTGGCGCAGCTGCGCAGTGACGCGCTCGTGTGTTGCCGGCGATCACAGTGCGCTGCAGCCGGTGAGTTTCTATTCCCGGTCAGTGTGACCGAGTCCTGCACAGCAATGCGTCATACATGCCCTGCCCACGCGTGTGTTATCGCTGCAGCGGATGATAACAtggcacatgtgtgtgtgtgttgatccCAGGGGAAGGTCATGTCCGGCCCGGCCCATGTGTCCAGAGTGCGGCTCCTGTACAAGCGCATCCTGCTGCTGCACCGCTTCCTGCCGCTGGACCTGCGGGCGCTGGGGGACCAGTACGTGCGGGACGAGTTCAGGCGGACCCGGGGGGCCACAGCGGAGGAGGCCCGGGGCTTCCTGGCGGAGTGGGAGGCCTACaagaacacactgcacacccaGGTGATGGAGTCTGTGACGAAGAAAACCGAGGGAATTCGCTTTGGAACCGATCTTTCCGGGGAAAAACTCGCCCAGTTTCAAGACTCCCAGATTGGACAGCTGTATGAGCTGATGCAGGAGGCAACGAAACCCAACCGGCAGTTCAGCTTTCAGGACGACCACCTTCCCAAGTAGAGGCTGACACGGCTGTCACTCTGGAGCGAAGGCTTGCCGGTTTGAAACGTGTTGTGGTGCAGTACTTGAGTTCCTGTTCCTGTTAATTGCAGCCATTAAGATATGCCATTACATTAAAGTACTCTGAGAGGCTGTTGAAACACAAATGAGTCTTCTGGATTACTTTTCTTACCAAGTTAttgtagaaaaagaaaaaaagagccCTTGTGGTCAAACTTAAGACAAGGAAATGTTTCACTTTGCAGCCATCATCTCGTGACTCGAGTGATCTCACCGCCGTGTGTGGTTGAGTGTTGAGACGTCAGTCCTCTCAGAGAGTGAATGGTACTTGTGTTCATGTCAGCCCATTAGTTCTGTCCAACACAACCCTCCATCACAAACTTCCAATATTTTTCCCAGAAGTTTAGAAACTCTCGCAACTATGGCTGCTAATCATGTTTTAATCAGAAACATTGTAGGTtgctaaaaagaaaagaaaaaggtgcCCTGCCTTAATCTGCAAGAGAAAGTACTACTTACACCACAACACCGATCTACTGAAGGCATCCATGTCATACCAGCTGGTGATCCTGGCATcgtttgtattttactttgttgCAATATTTTTAATCAGAAACACTCCACGATGAAGCCTACAGTTCCATGTGTGCAGCTTCCGAGCGCTGTGAAGTCAGAAAAGATGCATCTCCCCTGGGTCTGTTATCAGTATTGCTCAATTAGGGGGTGGGAGATGACCTTTGACTTCCTGGTGGTCAGTTCAGAACCTTCCAATGTGTCACCTGACCCATCACACAGATGTCTCTCTTCGGGAAAGCATGCTTCAAGAGCGCATCTCATTCAGCATGAAGGAGATTGTGGTTTTGCATATTGTTGCCCTGGGGGGTAAGAGTGTTTGCTaaggattaataataatgtgaatggtgatattattattattattattattattattattaataataatattattaacaaaGCTCAAAACAGACATAACGTATCAAGCTGGGAACATTTGTCATATCTCGCTCCTCCGTTTGTATACAGAGCTGTGATCAGTATCATTCTAGTCAGACGGTCTCTGATAACTCGAACCACCACCTGCACCCCAGGGATTGGCAGCTGAGCAAAGTGTTCCTGCCAGGACCACCTAAACGGAGAAAGAAACGCTACAAAAAGGCCACATTTGGAAGTATTTTCTATAGTTTACTGATTCTagtaattgatttttaaattttttaatcacaagtattgcaattttgaatgtttttatctgtaaaatgtaaaatactttcaccTAATAAACAGTTTACTGTA
>TU108360
gCTTCCTGTCCTGTACGTCCTCTCTGAGCACCAGCATGTAGCAGCGtaacaatgtgttttattaatatagacctgtgtgaaaacaacaacgcaacatttcaatattttttcgCGCCGTGGGTAGGCAACACCAACACCAGCACTAATCCTGAATAACCGGCTGCTGGCGTTTCTCGCCGGTGCTGTTACAATGTTGCACCGCTTTGGCTGTGGCGCAGCTGCGCAGTGACGCGCTCGTGTGTTGCCGGCGATCACAGTGCGCTGCAGCCGGGGAAGGTCATGTCCGGCCCGGCCCATGTGTCCAGAGTGCGGCTCCTGTACAAGCGCATCCTGCTGCTGCACCGCTTCCTGCCGCTGGACCTGCGGGCGCTGGGGGACCAGTACGTGCGGGACGAGTTCAGGCGGACCCGGGGGGCCACAGCGGAGGAGGCCCGGGGCTTCCTGGCGGAGTGGGAGGCCTACaagaacacactgcacacccaGGTGATGGAGTCTGTGACGAAGAAAACCGAGGGAATTCGCTTTGGAACCGATCTTTCCGGGGAAAAACTCGCCCAGTTTCAAGACTCCCAGATTGGACAGCTGTATGAGCTGATGCAGGAGGCAACGAAACCCAACCGGCAGTTCAGCTTTCAGGACGACCACCTTCCCAAGTAGAGGCTGACACGGCTGTCACTCTGGAGCGAAGGCTTGCCGGTTTGAAACGTGTTGTGGTGCAGTACTTGAGTTCCTGTTCCTGTTAATTGCAGCCATTAAGATATGCCATTACATTAAAGTACTCTGAGAGGCTGTTGAAACACAAATGAGTCTTCTGGATTACTTTTCTTACCAAGTTAttgtagaaaaagaaaaaaagagccCTTGTGGTCAAACTTAAGACAAGGAAATGTTTCACTTTGCAGCCATCATCTCGTGACTCGAGTGATCTCACCGCCGTGTGTGGTTGAGTGTTGAGACGTCAGTCCTCTCAGAGAGTGAATGGTACTTGTGTTCATGTCAGCCCATTAGTTCTGTCCAACACAACCCTCCATCACAAACTTCCAATATTTTTCCCAGAAGTTTAGAAACTCTCGCAACTATGGCTGCTAATCATGTTTTAATCAGAAACATTGTAGGTtgctaaaaagaaaagaaaaaggtgcCCTGCCTTAATCTGCAAGAGAAAGTACTACTTACACCACAACACCGATCTACTGAAGGCATCCATGTCATACCAGCTGGTGATCCTGGCATcgtttgtattttactttgttgCAATATTTTTAATCAGAAACACTCCACGATGAAGCCTACAGTTCCATGTGTGCAGCTTCCGAGCGCTGTGAAGTCAGAAAAGATGCATCTCCCCTGGGTCTGTTATCAGTATTGCTCAATTAGGGGGTGGGAGATGACCTTTGACTTCCTGGTGGTCAGTTCAGAACCTTCCAATGTGTCACCTGACCCATCACACAGATGTCTCTCTTCGGGAAAGCATGCTTCAAGAGCGCATCTCATTCAGCATGAAGGAGATTGTGGTTTTGCATATTGTTGCCCTGGGGGGTAAGAGTGTTTGCTaaggattaataataatgtgaatggtgatattattattattattattattattattattaataataatattattaacaaaGCTCAAAACAGACATAACGTATCAAGCTGGGAACATTTGTCATATCTCGCTCCTCCGTTTGTATACAGAGCTGTGATCAGTATCATTCTAGTCAGACGGTCTCTGATAACTCGAACCACCACCTGCACCCCAGGGATTGGCAGCTGAGCAAAGTGTTCCTGCCAGGACCACCTAAACGGAGAAAGAAACGCTACAAAAAGGCCACATTTGGAAGTATTTTCTATAGTTTACTGATTCTagtaattgatttttaaattttttaatcacaagtattgcaattttgaatgtttttatctgtaaaatgtaaaatactttcaccTAATAAACAGTTTACTGTA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021550 False 1519 mRNA 0.49 3 21098502 21108999
TU108358 False 1926 TUCP 0.47 2 21098592 21109368
TU108360 True 1971 TUCP 0.46 3 21098419 21109368

Neighbor

gene id symbol gene type direction distance location
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 17734 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 117794 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 158211 20929804 ~ 20940208 (+)
AMCG00021542 NA coding upstream 190633 20904388 ~ 20907786 (+)
AMCG00021540 NA coding upstream 199971 20890890 ~ 20898448 (+)
AMCG00021555 NA coding downstream 71434 21180802 ~ 21192757 (+)
AMCG00021556 NA coding downstream 83594 21192962 ~ 21194602 (+)
AMCG00021563 NA coding downstream 159835 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 250800 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 464682 21574050 ~ 21605063 (+)
G86800 NA non-coding upstream 59994 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 195564 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 395962 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 477698 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 484054 20612626 ~ 20614365 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 62722 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 127733 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 186163 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 406665 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 528908 21638276 ~ 21638516 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 186417 20908817 ~ 20912002 (+)
G86688 NA other upstream 430492 20667470 ~ 20667927 (+)
G86601 NA other upstream 697170 20342610 ~ 20401249 (+)
G86616 NA other upstream 717995 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 726883 20368153 ~ 20371536 (+)
AMCG00021551 NA other downstream 49256 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 120484 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 125702 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 132298 21241666 ~ 21257189 (+)
AMCG00021591 NA other downstream 1161503 22270871 ~ 22291141 (+)

Expression


Co-expression Network