AMCG00021551


Basic Information

Item Value
gene id AMCG00021551
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21158624 ~ 21165500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021551
TACGTACCAGTCGTGCATGTGTGCGTCACCGAGCTGTTTTTAAGGCGACTTGGACATCCCTCTTCCCAAAGGACATCAGCCCCCTGCAATCAAATACCTCGGGGACCCTGAAGGCGATTGAATCAAATATCGATCGTATGTAAAGTATACAAGCGGAAATTAGTCATAGGCTCTTCGAAATCACCTGCCAAAAAAGTAACTAATTGTTTTTAAGGACATTAAGAGACCCGACACCTCCCCATCTCCGGCTATAAAGCGCGCTGCGAGACTCCGCTGTCCAAAAGCCATCCGAGCGCAGTGCTGGCAGAGCTGGAGCGGCGCGCTGGGAGCTGTGCTGAACCCTTGGATGGACAGGATACTGGGCTCGCAGGTGTAACTCTGACTGGGACCAAGCCAAGCCACGGGGACAAGAACCCAACCCTTGTGCATAGTTAGAACCGGTGCCGTTTCATTGCCTCTGatcctctctctcacacagcgCACCCCCAGTCTCTCTCCTGGAGAAGAAGCCCGAGGAGCTGCACCCAGCCTCCACAATGAAACTCTTACTATCGGTGGTGGTCGTTTTTCTTGTTGTAGCAGAAGTCCTCTGTGAAGAAATGGGTCCCAGTGAAGATCTCAATTATTGGACTGACAGCAATCAAATACAGGATGAATGGGTCCCACCTGATTCCTTTAAGGAAATCCTAAGAAGAATCACAAGGAAACCCAGACCTCATCAGTTCATTGGTTTGATGGGCAAGCGGTCTCCTTcaatCCCACAGATTACCCGTAAAAAGACGGGGGTGAATGGGACCTCACCCAGGACTGGGGCACAGCAGGGATTTGCTCTAATTGCCAAGCCACAGCCACGGCTGGCTTCACGACACTTAGCCAACATGGGTGACCCTGAACCGTTCGCAGTTCGCAGATTGTCTCCAGCCCCGTGGAACCCATGCAGCTCTGCGACCAACAGTGTGTGGGGCTCAGGCGTCCAGAAGATGTGTGGGCTGCTGCAGTCATTTCGGCATAAAATGAATTCCTTTGTTGGTCTGATGGGCAAGAGGAGCGAAGAGCCAGATTCATACGAATGGAGCACAATACAGAATTACGAGCAGAGGCGTTAGCAGAGCATCAGACGTGAATCAGAGAGTCTCTGATACTCAAAGACATTCCTGTCGATGGCGGGAGATGTGTCTGAAACATAcagtcagttttcttttttgtttgttttttttaaattataaataactgtCGATTAAACTGTAACATTTGACGAAGCTGTTATTTTCACATCGTGGTTATGCTAATTGTACCAGCTTTTCCAGGGATGGGGGAGGATTAGGTCAACTCTGTATTTATAAAACGGAAATCTTTCTCACTGTCTGTCACAGAATAAATCATATCTACTGTACTGAAATgagattttctttttggttACTGATGATCAGGAAAGtcggtcacactttaaaatggtGCGATTCCTCTCATGGAGTTGTATGTAGAGACTCACCCACGAGGAatggcattttacattttaaaatgtcaccgGAAAGTCTTACAGCCTGGGAGTGACGCACAGCGACACTGTGTAACatagtgcctcagagtttccgTTCCATACGTTGTACTGTAGtaaatatgcattcaaatatatttgtattgtcaCAGCATGGCTTATTCTTTGTGACtgtatattgttataatttttaaaCCAAGGTATCTAGGACaagtcattaaaatatttctaaGTTATTACCAGAGCTTTCATTCTTACCCAGTGTTTAACAAAATCTCGACCATCCTTTTGGCCCATCGCCGGACGTGGACGTAATTGAGCGCCAGGAAGAGAGGTTACAGTgaagagcacagagcacagtaaagtgtagcCGGGTTACTGTGAAGCGAGGAGAGGGGCCGAAGGCGAAGGGCAGCAAAGGCGTGGTGAACACACGAGAGAAGAACGGAAGAAGAGAAATCAGCATGCAGATGAGCGATGGGTAGAAATGAGTCCAGGTGCCCTGACTTTGGTTTCAGAGGAAAGGTGTGGTCGATGAACGCGGTGTTACCCTATTACCACAGACCTGTAGTGCCACTCAGACTGACtcagctggtgtgtgtgtgtgtgtgtgaatatatctCTATCCTTTTCATTATTAGTCAACACATATATATGTCAGAGCTCTGGTCAGGCCGTGGCCTAGCGGTCCTACACCGTCGTCAGCCAGTAACTGCCTGGGGGCgtccaataaattaaatgaatgcaaacaaaactgagtaattaTCCTATACAAATAATTCATCCTAGGCCTTGACACATCCCTCCTCTCGAGGCCCTCGCTTCAATGTAATTAGAACTACACAACAGAAACTACCTGCTCACACTACACCCCCGCAGCCTgaataaatgacaccataacGGACACCGATGTCCTCACCTGTACTGAAACCTGG
>TU108371
AAAGTTGCAATTTCTCAGTAAGaaatgaaatgtgcaaaacaatGGTCCTACTGCAAcctgtgcattttattaataacagAACTGCATTCAATCCGTCAGTCATATCTTCTACGTACCAGTCGTGCATGTGTGCGTCACCGAGCTGTTTTTAAGGCGACTTGGACATCCCTCTTCCCAAAGGACATCAGCCCCCTGCAATCAAATACCTCGGGGACCCTGAAGGCGATTGAATCAAATATCGATCGTATGTAAAGTATACAAGCGGAAATTAGTCATAGGCTCTTCGAAATCACCTGCCAAAAAAGTAACTAATTGTTTTTAAGGACATTAAGAGACCCGACACCTCCCCATCTCCGGCTATAAAGCGCGCTGCGAGACTCCGCTGTCCAAAAGCCATCCGAGCGCAGTGCTGGCAGAGCTGGAGCGGCGCGCTGGGAGCTGTGCTGAACCCTTGGATGGACAGGATACTGGGCTCGCAGGTGTAACTCTGACTGGGACCAAGCCAAGCCACGGGGACAAGAACCCAACCCTTGTGCATAGTTAGAACCGGTGCCGTTTCATTGCCTCTGatcctctctctcacacagcgCACCCCCAGTCTCTCTCCTGGAGAAGAAGCCCGAGGAGCTGCACCCAGCCTCCACAATGAAACTCTTACTATCGGTGGTGGTCGTTTTTCTTGTTGTAGCAGAAGTCCTCTGTGAAGAAATGGGTCCCAGTGAAGATCTCAATTATTGGACTGACAGCAATCAAATACAGGATGAATGGGTCCCACCTGATTCCTTTAAGGAAATCCTAAGAAGAATCACAAGGAAACCCAGACCTCATCAGTTCATTGGTTTGATGGGCAAGCGGTCTCCTTcaatCCCACAGATTACCCGTAAAAGGCATAAAATGAATTCCTTTGTTGGTCTGATGGGCAAGAGGAGCGAAGAGCCAGATTCATACGAATGGAGCACAATACAGAATTACGAGCAGAGGCGTTAGCAGAGCATCAGACGTGAATCAGAGAGTCTCTGATACTCAAAGACATTCCTGTCGATGGCGGGAGATGTGTCTGAAACATAcagtcagttttcttttttgtttgttttttttaaattataaataactgtCGATTAAACTGTAACATTTGACGAAGCTGTTATTTTCACATCGTGGTTATGCTAATTGTACCAGCTTTTCCAGGGATGGGGGAGGATTAGGTCAACTCTGTATTTATAAAACGGAAATCTTTCTCACTGTCTGTCACAGAATAAATCATATCTACTGTACTGAAATgagattttctttttggttACTGATGATCAGGAAAGtcggtcacactttaaaatggtGCGATTCCTCTCATGGAGTTGTATGTAGAGACTCACCCACGAGGAatggcattttacattttaaaatgtcaccgGAAAGTCTTACAGCCTGGGAGTGACGCACAGCGACACTGTGTAACatagtgcctcagagtttccgTTCCATACGTTGTACTGTAGtaaatatgcattcaaatatatttgtattgtcaCAGCATGGCTTATTCTTTGTGACtgtatattgttataatttttaaaCCAAGGTATCTAGGACaagtcattaaaatatttctaaGTTATTACCAGAGCTTTCATTCTTACCCAGTGTTTAACAAAATCTCGACCATCCTTTTGGCCCATCGCCGGACGTGGACGTAATTGAGCGCCAGGAAGAGAGGTTACAGTgaagagcacagagcacagtaaagtgtagcCGGGTTACTGTGAAGCGAGGAGAGGGGCCGAAGGCGAAGGGCAGCAAAGGCGTGGTGAACACACGAGAGAAGAACGGAAGAAGAGAAATCAGCATG

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K05239 TAC1; tachykinin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021551 True 2433 mRNA 0.47 6 21158733 21165500
TU108371 False 1846 TUCP 0.45 5 21158624 21165032

Neighbor

gene id symbol gene type direction distance location
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 77939 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 177999 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 218416 20929804 ~ 20940208 (+)
AMCG00021542 NA coding upstream 250838 20904388 ~ 20907786 (+)
AMCG00021540 NA coding upstream 260176 20890890 ~ 20898448 (+)
AMCG00021555 NA coding downstream 15302 21180802 ~ 21192757 (+)
AMCG00021556 NA coding downstream 27462 21192962 ~ 21194602 (+)
AMCG00021563 NA coding downstream 103703 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 194668 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 408550 21574050 ~ 21605063 (+)
G86800 NA non-coding upstream 120199 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 255769 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 456167 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 537903 20620506 ~ 20620721 (+)
G86685 NA non-coding upstream 544259 20612626 ~ 20614365 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding downstream 6590 21172090 ~ 21175659 (+)
G86859 NA non-coding downstream 71601 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 130031 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 350533 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 472776 21638276 ~ 21638516 (+)
AMCG00021550 NA other upstream 49256 21098419 ~ 21109368 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 246622 20908817 ~ 20912002 (+)
G86688 NA other upstream 490697 20667470 ~ 20667927 (+)
G86601 NA other upstream 757375 20342610 ~ 20401249 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 64352 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 69570 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 76166 21241666 ~ 21257189 (+)
AMCG00021591 NA other downstream 1105371 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1531664 22697164 ~ 22711144 (+)

Expression


Co-expression Network