AMCG00021552 (dlx5,LOC106570474)


Basic Information

Item Value
gene id AMCG00021552
gene name dlx5,LOC106570474
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21086875 ~ 21094522 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021552
ATGGACAGCTCTGGCCAATGGAGCCAGATCCTCCCCGTCGTGCGTAAGAGCGCAATTAGGGATTTAACCAGGGCTGGGCTGCGCTGCCGGGACCAGTCTGGGAAAGAGTGCATCCGTCAGAGCTCCCGCGATGCCAGAGTAGACTTTCAGGGCACTGTTGCGTCGGCTGCACTTCACTTCCACATCTCCCCTCGCACTATGACCGGGGTTTTCGACAGAAGGGTTCCCAGTGTCAGATCCTCCGATTTCCAGAGTCCTTTCCAGCACCCCGCCATGCACCACCCGTCCCAGGAGTCTCCCACTTTACCCGAGTCCACAGCCACGGATTCCGGCTACTACAGCCCGGCGGCGGGGGTCCCCCACGGCTACTGTTCGCCCAGTTCCACGTCGTACGGGAAAGCGCTTAATCCTTACCAATACCAGTACCACGGAGTCAATGGATCTGCTGGGAATTATCCTGCGAAATCCTACCCAGATTACAGCTCGTATACCAGCGCTGCTTACCACCAGTACGCCGGGACTTACAGCAGGGTGCAAGCGCAGTCTAGCCCGCCAGAAAAGGAGGTTTCGGAGCCTGAGGTCCGGATGGTAAACGGAAAACCCAAGAAGGTCCGGAAGCCCAGGACCATCTACTCCAGCTTCCAGCTCGCGGCTCTGCAGCGGCGCTTCCAGAACACGCAGTACCTCGCGCTGCCCGAGAGAGCCGAGCTCGCGGCGTCGCTGGGCCTCACGCAGACGCAGGTGAAGATCTGGTTCCAGAACAAGAGGTCCAAGCTGAAGAAGATCATGAAGAACGGCGAGCTGCCCCCGGAGcacagccccagctccagcgACCCCATGGCCTGCAACTCCCCACAATCCCCCGCTGTCTGGGACTCCCAAGGCCCGTCCAGGCCGCACAACCACCACTCCCACCCGCAAAATGCCAACACGGCGGCGTCAAACTTTTTGGAAACGTCCAGTTCTTGGTACAGCACCGCCGGGACCGTGAATTCCCATCTGCAGCCCCCCAACTCCATACAGCACTCACTGGTTCTGGGATCAGGGACACTTTATTAAAACCGTCAGCACcatcagcagcaacagcagcagcgctatttaaagtatttaattgtgTCGGACTCCATCATTTCTAATGTACAAGGAATATGCAAGATATTCATATGTCGGTATTAGAAGAAAGTGtataatgtgtaaaatgtgtgcatgtaatttattgcattttttggaAGAGAaatgaaacatatttttcactAAACGGACTTGACTGATCTTGACACTTGCAATAGTGCCTTGAATATTGACCTCAACGCTAAACGAacactctttttttttcaatatcatAACACTGTACATACCTGTAGATAGAGGAATTAAACTGTATATTCTGGTTAAATAAAACTAAGACCTTCTGCGAATATA

Function

symbol description
dlx5 Enables transcription cis-regulatory region binding activity. Involved in cell population proliferation and positive regulation of transcription, DNA-templated. Predicted to be located in chromatin. Implicated in split hand-foot malformation 1 and split hand-foot malformation 1 with sensorineural hearing loss.

NR:

description
homeobox protein Dlx5a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18489 DLX5; homeobox protein DLX5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021552 True 1422 mRNA 0.53 4 21086875 21094522

Neighbor

gene id symbol gene type direction distance location
AMCG00021548 NA coding downstream 48450 21034863 ~ 21038425 (-)
AMCG00021549 NA coding downstream 66474 20983600 ~ 21020401 (-)
AMCG00021546 NA coding downstream 160160 20916683 ~ 20926715 (-)
AMCG00021545 NA coding downstream 184110 20899071 ~ 20902765 (-)
AMCG00021538 sgce coding downstream 231101 20843663 ~ 20855774 (-)
AMCG00021553 NA coding upstream 15232 21109754 ~ 21140683 (-)
AMCG00021554 asns,LOC107568288 coding upstream 72059 21166581 ~ 21175350 (-)
AMCG00021557 NA coding upstream 101073 21195595 ~ 21205945 (-)
AMCG00021562 NA coding upstream 113174 21207696 ~ 21227807 (-)
AMCG00021559 LOC105891776 coding upstream 138409 21232931 ~ 21237464 (-)
G86739 col1a2,LOC106570460 non-coding downstream 232581 20824022 ~ 20854294 (-)
G86740 NA non-coding downstream 255953 20828259 ~ 20830922 (-)
G86738 NA non-coding downstream 262911 20823000 ~ 20823964 (-)
G86736 NA non-coding downstream 264272 20821632 ~ 20822603 (-)
G86689 NA non-coding downstream 472767 20612663 ~ 20614108 (-)
G86848 NA non-coding upstream 81184 21175706 ~ 21184318 (-)
G86849 NA non-coding upstream 92246 21186768 ~ 21188838 (-)
G86850 NA non-coding upstream 95317 21189839 ~ 21190932 (-)
G86881 NA non-coding upstream 196851 21291373 ~ 21293903 (-)
G86893 NA non-coding upstream 421510 21516032 ~ 21516234 (-)
G86808 NA other downstream 3305 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 361995 20721884 ~ 20724880 (-)
G86649 NA other downstream 689092 20395612 ~ 20397783 (-)
G86640 NA other downstream 726620 20358301 ~ 20360255 (-)
G86600 NA other downstream 751571 20329422 ~ 20335304 (-)
AMCG00021569 NA other upstream 571880 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2060665 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2234803 23329325 ~ 23332968 (-)
G87263 NA other upstream 2243729 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 2400503 23495025 ~ 23498761 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G230897 NA non-coding CI01000054 null 2225164 ~ 2227105 (-)