AMCG00021556


Basic Information

Item Value
gene id AMCG00021556
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21192962 ~ 21194602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021556
ATGGCAGAAAAGCTGAATGTAACGACCGCAATTGACGCCCGGCACCTGTTGCTCCCGCGCAAGCGTAATTGCGCAAGTGCTGAGCCGTGTGAGGCGGAGTCTTCCGGCTACCTGTTTCACCAGAGGGTTGAATCGCTGCTGAGGAACAGCGAGTCGGACGAGCCGGAGGGGCCCCTGCTCCTGGGGGTCATGAACTTCAGTGCCGACCACCAGCAGCACGCAGATGAGGACCAGGGGCTGGCGGAGGATCTGTACAGGAAAGTGCGTGTGCTGTGCTGGGTGATGACGGCTCCGCAGAACCTGGAGAAGAAGACGGCCCATGTCCGCGCCACCTGGTCCAAACGCTGCAACACGGTGCTCTTCATGAGCTCAGTGGTGGACGCGGACTTCCCCACGGTGGGGCTCAACGTGTCCGAGGGCCGGGACCAGCTCTACTGGAAAACCATCAGGGCCTTCCAGTACGTCTACAAGCACCATCTGGACGAGGCTGACTGGTTCATGAAAGCTGACGATGACACGTACGTGGTGGTGGAGAATCTGCGCCATCTTCTGTCCCAGTACAGCAGCGAGCAGCCCATCTACTTCGGCCGCAGATTCAAGCCTTTCATGAAGCAGGGCTACATGAGCGGGGGAGCCGGGTATGTCCTGAGCAAAGAGGGGCTGAGGAGGTTTATTGAGGGCTTCAGGACAGGACAGTGCACTCACTACACCACCATCGAAGACGTGGGCATGGGGAAGTGCATGGAGACCATGAATGTAGTGGCTGGAGACCCCAGAGATAAAAACCAACGGGAGACCTTCCATCCTTTCACTCCAGGGAGTCACTTGATTAAGGGTGCCTGGTCGAAACAGTCCTGGTACTGGGCGTACAATTATTACCCCGTGCAAGAGGTGAGCCAGCAGAGCGACCGCATTGCCCTTGCGTGGAAATACAACTGCATTAGACTTGGGAAGttggaatag

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021556 True 963 mRNA 0.58 3 21192962 21194602

Neighbor

gene id symbol gene type direction distance location
AMCG00021555 NA coding upstream 205 21180802 ~ 21192757 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 112277 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 212337 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 252754 20929804 ~ 20940208 (+)
AMCG00021542 NA coding upstream 285176 20904388 ~ 20907786 (+)
AMCG00021563 NA coding downstream 74601 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 165566 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 379448 21574050 ~ 21605063 (+)
AMCG00021567 NA coding downstream 462940 21657542 ~ 21659873 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding downstream 620368 21814970 ~ 21828220 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 17303 21172090 ~ 21175659 (+)
G86800 NA non-coding upstream 154537 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 290107 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 490505 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 572241 20620506 ~ 20620721 (+)
G86859 NA non-coding downstream 42499 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 100929 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 321431 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 443674 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 1108964 22303566 ~ 22306888 (+)
AMCG00021551 NA other upstream 27462 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 83594 21098419 ~ 21109368 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 280960 20908817 ~ 20912002 (+)
G86688 NA other upstream 525035 20667470 ~ 20667927 (+)
G86616 NA other upstream 812538 20378423 ~ 20380424 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 35250 21229852 ~ 21232853 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 40468 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 47064 21241666 ~ 21257189 (+)
AMCG00021591 NA other downstream 1076269 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1502562 22697164 ~ 22711144 (+)

Expression


Co-expression Network