AMCG00021561 (LOC106582151,LOC105891776,LOC106605261)


Basic Information

Item Value
gene id AMCG00021561
gene name LOC106582151,LOC105891776,LOC106605261
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21229852 ~ 21232853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021561
ATGAGCGGCACCAAGCCCGACATCCTGTGGTCTCCGCACCATGCGGACCGCTACGTGCTCTGCGACTCGGAGCTCAGCCTGTACCGCATTGAGTCCGTGGGCAGCGCCGAGGCCCGTGCCGGGGTGCTGCGGCTGTCTGAGGAGACGGCCGCCACCATGCTGGCCATCAACTCGGACACGCCCTACATGAAGTGCGTGGCCTGGTACCCAAAGCCCGAGCCGGAGTGCCTGCTGGCGGTGGGGCAGGCGAACGGGCGCGTGGTGCTGACCAGCCTGGGCCAGAGCCACAACACCAAGTGCAAGGAGCTGATGGGGAAGGAGTTTGTGCCCAAACACGCCAGGCAGTGCAACACCTTGGCCTGGAACCCCATGGACAGCAACTGGTTGGCCGCCGGGCTGGACAAGCACCGGGCGGACTTCTCCGTGCTGGTCTGGGACATCAGCAGCAAGCTTGCTCCCGAGGCCGCGGTGCCCACGGAGAAGATCCGCCTCTCGGCTGGCGACACCGACTCGGGCCTGGTGGTGACCAAGCCGCTGTACGAGCTGGGCCAGAACGATGCCTGCCTGTCGCTCTGCTGGCTCCCCCGGGACCAGAAGCTGCTGCTGGCCGGCATGCACCGCAACCTGGCCATCTTCGACCTGCGCAACACCAGCCAGAAGATGTTCGTCAACACCAAGGCCATCCAGGGCCCCCCCCGCTCACCCTCACCTGAACCAGCTGAGCATGTGGCCCGCATGGCCGCCGTGGCGACAGTTGTGGCACCAGGTGAACCAGTTGTTGAACTGCGCCAGCTTCTTGTCCTTGCTGAGGTCCACCTTCTCGTCCGACTTCCCCGTCCCTACGACAGTGGAGAGCAGATCAACTAA
>TU108414
GCTCGGCGCAGGAAGTGACGCTTTGTTTCCGGGGGACGTATTTTGAAGCCGCACAGGGTAGCACGCGAGCGGCCCGCTTCCCCCCACAGAGTCAAAACAGAAACCGTGAGTAGCGGCCGCGGAACCGAGTCTGTTGTGTGTCAACGGCATGTGAAATACGCgcatatgtgtgcatgtgtgccgGCAGTGTCTGTGTGCGGCGGCCTTGTGCAGCGCGGTGACAGATTTTACGTCGCGCTGCCGCCGGTGGCAAATGATCTGTTTTACTTGGAAAAGTTGCGTCTTTCAATGTCGTTGTCTTCGGATACTTCAGCACATCTGCTGCAGCTGTTTCCCCCAGAAGTGCAGCTGCTGTAACTCTCTGATCTGTATATTAATCCGCGTTTTTGTAACGGCGTTGATGCTGGGTTCCCTGGGGTAGCAGTGGCTGCCGGAGCTGGGAGAGATGAGCGGCACCAAGCCCGACATCCTGTGGTCTCCGCACCATGCGGACCGCTACGTGCTCTGCGACTCGGAGCTCAGCCTGTACCGCATTGAGTCCGTGGGCAGCGCCGAGGCCCGTGCCGGGGTGCTGCGGCTGTCTGAGGAGACGGCCGCCACCATGCTGGCCATCAACTCGGACACGCCCTACATGAAGTGCGTGGCCTGGTACCCAAAGCCCGAGCCGGAGTGCCTGCTGGCGGTGGGGCAGGCGAACGGGCGCGTGGTGCTGACCAGCCTGGGCCAGAGCCACAACACCAAGTGCAAGGAGCTGATGGGGAAGGAGTTTGTGCCCAAACACGCCAGGCAGTGCAACACCTTGGCCTGGAACCCCATGGACAGCAACTGGTTGGCCGCCGGGCTGGACAAGCACCGGGCGGACTTCTCCGTGCTGGTCTGGGACATCAGCAGCAAGCTTGCTCCCGAGGCCGCGGTGCCCACGGAGAAGATCCGCCTCTCGGCTGGCGACACCGACTCGGGCCTGGTGGTGACCAAGCCGCTGTACGAGCTGGGCCAGAACGATGCCTGCCTGTCGCTCTGCTGGCTCCCCCGGGACCAGAAGCTGCTGCTGGCCGGCATGCACCGCAACCTGGCCATCTTCGACCTGCGCAACACCAGCCAGAAGATGTTCGTCAACACCAAGGCCATCCAGGGCGTGACGGNNN
>TU108415
GCTCGGCGCAGGAAGTGACGCTTTGTTTCCGGGGGACGTATTTTGAAGCCGCACAGGGTAGCACGCGAGCGGCCCGCTTCCCCCCACAGAGTCAAAACAGAAACCGCGTTGATGCTGGGTTCCCTGGGGTAGCAGTGGCTGCCGGAGCTGGGAGAGATGAGCGGCACCAAGCCCGACATCCTGTGGTCTCCGCACCATGCGGACCGCTACGTGCTCTGCGACTCGGAGCTCAGCCTGTACCGCATTGAGTCCGTGGGCAGCGCCGAGGCCCGTGCCGGGGTGCTGCGGCTGTCTGAGGAGACGGCCGCCACCATGCTGGCCATCAACTCGGACACGCCCTACATGAAGTGCGTGGCCTGGTACCCAAAGCCCGAGCCGGAGTGCCTGCTGGCGGTGGGGCAGGCGAACGGGCGCGTGGTGCTGACCAGCCTGGGCCAGAGCCACAACACCAAGTGCAAGGAGCTGATGGGGAAGGAGTTTGTGCCCAAACACGCCAGGCAGTGCAACACCTTGGCCTGGAACCCCATGGACAGCAACTGGTTGGCCGCCGGGCTGGACAAGCACCGGGCGGACTTCTCCGTGCTGGTCTGGGACATCAGCAGCAAGCTTGCTCCCGAGGCCGCGGTGCCCACGGAGAAGATCCGCCTCTCGGCTGGCGACACCGACTCGGGCCTGGTGGTGACCAAGCCGCTGTACGAGCTGGGCCAGAACGATGCCTGCCTGTCGCTCTGCTGGCTCCCCCGGGACCAGAAGCTGCTGCTGGCCGGCATGCACCGCAACCTGGCCATCTTCGACCTGCGCAACACCAGCCAGAAGATGTTCGTCAACACCAAGGCCATCCAGGGCGTGACGGNNN

Function

NR:

description
PREDICTED: WD repeat-containing protein mio-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021561 False 867 mRNA 0.65 2 21230789 21232853
TU108414 True 1145 TUCP 0.62 2 21229852 21231488
TU108415 False 856 TUCP 0.65 2 21229852 21231488

Neighbor

gene id symbol gene type direction distance location
AMCG00021556 NA coding upstream 35250 21192962 ~ 21194602 (+)
AMCG00021555 NA coding upstream 37095 21180802 ~ 21192757 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 149167 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 249227 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 289644 20929804 ~ 20940208 (+)
AMCG00021563 NA coding downstream 36350 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 127315 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 341197 21574050 ~ 21605063 (+)
AMCG00021567 NA coding downstream 424689 21657542 ~ 21659873 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding downstream 582117 21814970 ~ 21828220 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 54193 21172090 ~ 21175659 (+)
G86800 NA non-coding upstream 191427 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 326997 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 527395 20699214 ~ 20702457 (+)
G86687 NA non-coding upstream 609131 20620506 ~ 20620721 (+)
G86859 NA non-coding downstream 4248 21237101 ~ 21238163 (+)
G86884 NA non-coding downstream 62678 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 283180 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 405423 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 1070713 22303566 ~ 22306888 (+)
AMCG00021551 NA other upstream 64352 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 120484 21098419 ~ 21109368 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 317850 20908817 ~ 20912002 (+)
G86688 NA other upstream 561925 20667470 ~ 20667927 (+)
G86616 NA other upstream 849428 20378423 ~ 20380424 (+)
G86861 mios,LOC106605261,LOC106582151 other downstream 2217 21235070 ~ 21236080 (+)
AMCG00021560 NA other downstream 8813 21241666 ~ 21257189 (+)
AMCG00021591 NA other downstream 1038018 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1464311 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2941550 24174403 ~ 24178092 (+)

Expression


Co-expression Network